Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 MROH4P-201ENST00000431302 1578 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 BCRP1-201ENST00000444246 691 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 SPTLC1P1-201ENST00000447199 261 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 TSPY16P-201ENST00000449843 468 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 FAM86LP-201ENST00000478302 853 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 SPCS2P1-201ENST00000561636 679 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 AL645728.2-202ENST00000641679 227 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 AGAP7P-201ENST00000582299 2062 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 AGAP14-201ENST00000624701 2060 ntBASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
AP4E1Q9UPM8 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 MEP1AP4-201ENST00000423244 1087 ntBASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 RN7SL399P-201ENST00000471648 279 ntBASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 AC093004.1-201ENST00000508850 424 ntBASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 AC055876.2-201ENST00000531834 546 ntBASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 AL355385.1-201ENST00000606123 409 ntBASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 AL096865.1-201ENST00000606796 927 ntBASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 TNRC18P2-201ENST00000417666 2714 ntBASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.05■□□□□ 0.16
AP4E1Q9UPM8 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms