Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIMA1Q9UHB6 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIMA1Q9UHB6 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIMA1Q9UHB6 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.89■□□□□ 0.3
LIMA1Q9UHB6 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.89■□□□□ 0.3
LIMA1Q9UHB6 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 RPSAP43-201ENST00000402237 625 ntBASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 AL512361.1-201ENST00000554200 418 ntBASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 AC113367.3-201ENST00000508316 1912 ntBASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 AC007787.1-201ENST00000588095 1583 ntBASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIMA1Q9UHB6 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 NFIC-211ENST00000641145 8399 ntBASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 HLA-V-204ENST00000476601 1289 ntBASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 AC074044.1-201ENST00000609673 707 ntBASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIMA1Q9UHB6 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 AC138969.3-201ENST00000546612 1459 ntBASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 AC138932.2-201ENST00000548268 1459 ntBASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 AC126755.4-201ENST00000549796 1459 ntBASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms