Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 FKBP4P6-201ENST00000457486 1332 ntBASIC14.92□□□□□ -0.02
VPS13AQ96RL7 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 PCDHA12-202ENST00000613593 2588 ntBASIC14.92□□□□□ -0.02
VPS13AQ96RL7 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 MIR566-201ENST00000385187 94 ntBASIC14.91□□□□□ -0.02
VPS13AQ96RL7 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 AC138466.3-201ENST00000619983 221 ntBASIC14.91□□□□□ -0.02
VPS13AQ96RL7 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 VDAC1P1-201ENST00000439229 848 ntBASIC14.91□□□□□ -0.02
VPS13AQ96RL7 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS13AQ96RL7 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 RPL8P2-201ENST00000430538 502 ntBASIC14.9□□□□□ -0.02
VPS13AQ96RL7 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 DUX4L46-201ENST00000566845 751 ntBASIC14.9□□□□□ -0.02
VPS13AQ96RL7 AC093752.3-201ENST00000567343 901 ntBASIC14.9□□□□□ -0.02
VPS13AQ96RL7 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS13AQ96RL7 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms