Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
ATG4AQ8WYN0 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 INTS4P1-203ENST00000641008 3683 ntBASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 RPSAP43-201ENST00000402237 625 ntBASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
ATG4AQ8WYN0 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 GHSR-202ENST00000427970 912 ntBASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 AC015910.1-201ENST00000579400 975 ntBASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 LINC00628-201ENST00000628516 1289 ntBASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 AF228730.6-201ENST00000641497 218 ntBASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 AC084121.3-201ENST00000641716 218 ntBASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 AC015656.1-201ENST00000624209 3578 ntBASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
ATG4AQ8WYN0 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms