Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SNED1Q8TER0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SNED1Q8TER0 AC127383.1-201ENST00000444697 1800 ntBASIC18.48■□□□□ 0.55
SNED1Q8TER0 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 FAM90A7P-201ENST00000382628 1395 ntBASIC18.48■□□□□ 0.55
SNED1Q8TER0 FAM90A23P-201ENST00000400136 1395 ntBASIC18.48■□□□□ 0.55
SNED1Q8TER0 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SNED1Q8TER0 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SNED1Q8TER0 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SNED1Q8TER0 KLF2P1-201ENST00000447438 1042 ntBASIC18.48■□□□□ 0.55
SNED1Q8TER0 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 AC012044.1-201ENST00000603431 297 ntBASIC18.48■□□□□ 0.55
SNED1Q8TER0 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.48■□□□□ 0.55
SNED1Q8TER0 AL136301.1-201ENST00000615830 422 ntBASIC18.48■□□□□ 0.55
SNED1Q8TER0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 MST1L-201ENST00000442552 2185 ntBASIC18.47■□□□□ 0.55
SNED1Q8TER0 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.47■□□□□ 0.55
SNED1Q8TER0 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 FKBP4P6-201ENST00000457486 1332 ntBASIC18.47■□□□□ 0.55
SNED1Q8TER0 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 RN7SKP214-201ENST00000364208 315 ntBASIC18.47■□□□□ 0.55
SNED1Q8TER0 RN7SKP230-201ENST00000365642 335 ntBASIC18.47■□□□□ 0.55
SNED1Q8TER0 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 AC138894.2-201ENST00000602838 371 ntBASIC18.47■□□□□ 0.55
SNED1Q8TER0 AC103691.2-201ENST00000618824 433 ntBASIC18.47■□□□□ 0.55
SNED1Q8TER0 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SNED1Q8TER0 LINC02199-201ENST00000506655 2702 ntBASIC18.47■□□□□ 0.55
SNED1Q8TER0 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.47■□□□□ 0.55
SNED1Q8TER0 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 AC011840.2-201ENST00000563063 1520 ntBASIC18.46■□□□□ 0.55
SNED1Q8TER0 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.46■□□□□ 0.55
SNED1Q8TER0 Z98259.2-201ENST00000641583 609 ntBASIC18.46■□□□□ 0.55
SNED1Q8TER0 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SNED1Q8TER0 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
SNED1Q8TER0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.45■□□□□ 0.54
SNED1Q8TER0 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNED1Q8TER0 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.45■□□□□ 0.54
SNED1Q8TER0 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNED1Q8TER0 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC18.45■□□□□ 0.54
SNED1Q8TER0 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNED1Q8TER0 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.45■□□□□ 0.54
SNED1Q8TER0 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNED1Q8TER0 REXO1L5P-201ENST00000622260 2098 ntBASIC18.45■□□□□ 0.54
SNED1Q8TER0 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SNED1Q8TER0 AC026691.1-201ENST00000602502 2017 ntBASIC18.45■□□□□ 0.54
SNED1Q8TER0 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNED1Q8TER0 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SNED1Q8TER0 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNED1Q8TER0 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.45■□□□□ 0.54
SNED1Q8TER0 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SNED1Q8TER0 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms