Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.31■□□□□ 0.04
SRP54P61011 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.31■□□□□ 0.04
SRP54P61011 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 AC005229.1-201ENST00000392885 409 ntBASIC15.31■□□□□ 0.04
SRP54P61011 BAATP1-201ENST00000412284 1225 ntBASIC15.31■□□□□ 0.04
SRP54P61011 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.31■□□□□ 0.04
SRP54P61011 AL355864.2-201ENST00000447420 863 ntBASIC15.31■□□□□ 0.04
SRP54P61011 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.31■□□□□ 0.04
SRP54P61011 AC093433.1-201ENST00000458048 571 ntBASIC15.31■□□□□ 0.04
SRP54P61011 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.31■□□□□ 0.04
SRP54P61011 AC104989.1-201ENST00000519711 778 ntBASIC15.31■□□□□ 0.04
SRP54P61011 AP001889.1-201ENST00000525414 633 ntBASIC15.31■□□□□ 0.04
SRP54P61011 SNX29P1-201ENST00000548357 1007 ntBASIC15.31■□□□□ 0.04
SRP54P61011 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.31■□□□□ 0.04
SRP54P61011 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.31■□□□□ 0.04
SRP54P61011 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 AC133552.6-201ENST00000613406 534 ntBASIC15.31■□□□□ 0.04
SRP54P61011 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 AP003680.1-201ENST00000598970 3660 ntBASIC15.31■□□□□ 0.04
SRP54P61011 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.31■□□□□ 0.04
SRP54P61011 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.31■□□□□ 0.04
SRP54P61011 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.31■□□□□ 0.04
SRP54P61011 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.31■□□□□ 0.04
SRP54P61011 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.31■□□□□ 0.04
SRP54P61011 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.31■□□□□ 0.04
SRP54P61011 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SRP54P61011 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SRP54P61011 AL161772.1-201ENST00000610494 4412 ntBASIC15.3■□□□□ 0.04
SRP54P61011 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.3■□□□□ 0.04
SRP54P61011 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SRP54P61011 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.3■□□□□ 0.04
SRP54P61011 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.3■□□□□ 0.04
SRP54P61011 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SRP54P61011 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SRP54P61011 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.3■□□□□ 0.04
SRP54P61011 RPS2P32-201ENST00000439199 892 ntBASIC15.3■□□□□ 0.04
SRP54P61011 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.3■□□□□ 0.04
SRP54P61011 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SRP54P61011 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.3■□□□□ 0.04
SRP54P61011 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.3■□□□□ 0.04
SRP54P61011 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.3■□□□□ 0.04
SRP54P61011 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.3■□□□□ 0.04
SRP54P61011 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.3■□□□□ 0.04
SRP54P61011 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.3■□□□□ 0.04
SRP54P61011 MIR4259-201ENST00000584466 101 ntBASIC15.3■□□□□ 0.04
SRP54P61011 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.3■□□□□ 0.04
SRP54P61011 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
SRP54P61011 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.3■□□□□ 0.04
SRP54P61011 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.3■□□□□ 0.04
SRP54P61011 COX11-210ENST00000639671 696 ntBASIC15.3■□□□□ 0.04
SRP54P61011 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
SRP54P61011 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SRP54P61011 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SRP54P61011 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SRP54P61011 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
SRP54P61011 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
SRP54P61011 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms