Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL18A1P39060 RNA5SP359-201ENST00000364838 113 ntBASIC19.83■□□□□ 0.77
COL18A1P39060 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL18A1P39060 MIR557-201ENST00000385239 98 ntBASIC19.83■□□□□ 0.77
COL18A1P39060 RPS9P1-201ENST00000419943 583 ntBASIC19.83■□□□□ 0.77
COL18A1P39060 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC19.83■□□□□ 0.77
COL18A1P39060 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC19.83■□□□□ 0.77
COL18A1P39060 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC19.83■□□□□ 0.77
COL18A1P39060 OR2R1P-201ENST00000441404 914 ntBASIC19.83■□□□□ 0.77
COL18A1P39060 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC19.83■□□□□ 0.77
COL18A1P39060 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC19.83■□□□□ 0.77
COL18A1P39060 RPL18AP3-201ENST00000462885 528 ntBASIC19.83■□□□□ 0.77
COL18A1P39060 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC19.83■□□□□ 0.77
COL18A1P39060 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC19.83■□□□□ 0.77
COL18A1P39060 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC19.83■□□□□ 0.77
COL18A1P39060 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.83■□□□□ 0.77
COL18A1P39060 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
COL18A1P39060 AC005618.3-201ENST00000624928 458 ntBASIC19.83■□□□□ 0.77
COL18A1P39060 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.83■□□□□ 0.77
COL18A1P39060 FRMPD2B-201ENST00000431305 1347 ntBASIC19.83■□□□□ 0.77
COL18A1P39060 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC19.83■□□□□ 0.77
COL18A1P39060 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
COL18A1P39060 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.83■□□□□ 0.76
COL18A1P39060 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL18A1P39060 FAM90A2P-201ENST00000511144 1395 ntBASIC19.83■□□□□ 0.76
COL18A1P39060 FAM90A25P-201ENST00000528404 1395 ntBASIC19.83■□□□□ 0.76
COL18A1P39060 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
COL18A1P39060 AL590440.2-201ENST00000641973 1595 ntBASIC19.83■□□□□ 0.76
COL18A1P39060 AC015909.3-201ENST00000572855 1794 ntBASIC19.83■□□□□ 0.76
COL18A1P39060 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL18A1P39060 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL18A1P39060 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL18A1P39060 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL18A1P39060 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL18A1P39060 NCR3-202ENST00000376071 541 ntTSL 5 BASIC19.83■□□□□ 0.76
COL18A1P39060 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC19.83■□□□□ 0.76
COL18A1P39060 AC131206.1-201ENST00000538078 1211 ntBASIC19.83■□□□□ 0.76
COL18A1P39060 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC19.83■□□□□ 0.76
COL18A1P39060 AC025262.2-201ENST00000623975 1056 ntBASIC19.83■□□□□ 0.76
COL18A1P39060 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC19.83■□□□□ 0.76
COL18A1P39060 AC020916.1-201ENST00000587762 1774 ntBASIC19.82■□□□□ 0.76
COL18A1P39060 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 AC144522.1-201ENST00000625111 1658 ntBASIC19.82■□□□□ 0.76
COL18A1P39060 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC19.82■□□□□ 0.76
COL18A1P39060 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
COL18A1P39060 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL18A1P39060 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.82■□□□□ 0.76
COL18A1P39060 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 XBP1P1-201ENST00000436573 652 ntBASIC19.82■□□□□ 0.76
COL18A1P39060 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 MIR4649-201ENST00000582839 64 ntBASIC19.82■□□□□ 0.76
COL18A1P39060 NAT9-220ENST00000582870 896 ntTSL 5 BASIC19.82■□□□□ 0.76
COL18A1P39060 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC19.82■□□□□ 0.76
COL18A1P39060 AC133540.1-201ENST00000620845 1019 ntBASIC19.82■□□□□ 0.76
COL18A1P39060 AP000845.1-201ENST00000581677 2131 ntBASIC19.82■□□□□ 0.76
COL18A1P39060 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL18A1P39060 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.82■□□□□ 0.76
COL18A1P39060 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
COL18A1P39060 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC19.81■□□□□ 0.76
COL18A1P39060 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.81■□□□□ 0.76
COL18A1P39060 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.81■□□□□ 0.76
COL18A1P39060 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.81■□□□□ 0.76
COL18A1P39060 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 AL512430.1-201ENST00000392575 860 ntBASIC19.81■□□□□ 0.76
COL18A1P39060 AL627231.1-201ENST00000394467 1125 ntBASIC19.81■□□□□ 0.76
COL18A1P39060 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC19.81■□□□□ 0.76
COL18A1P39060 SKA2-202ENST00000437036 625 ntTSL 2 BASIC19.81■□□□□ 0.76
COL18A1P39060 AP000358.1-201ENST00000456260 156 ntBASIC19.81■□□□□ 0.76
COL18A1P39060 AP002803.1-201ENST00000528836 498 ntBASIC19.81■□□□□ 0.76
COL18A1P39060 PGAM1P5-201ENST00000548011 764 ntBASIC19.81■□□□□ 0.76
COL18A1P39060 MIR4522-201ENST00000584932 87 ntBASIC19.81■□□□□ 0.76
COL18A1P39060 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
COL18A1P39060 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC19.81■□□□□ 0.76
COL18A1P39060 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
COL18A1P39060 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC19.81■□□□□ 0.76
COL18A1P39060 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 LILRP1-201ENST00000444199 1370 ntBASIC19.81■□□□□ 0.76
COL18A1P39060 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL18A1P39060 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
COL18A1P39060 AP000356.3-201ENST00000382243 753 ntBASIC19.8■□□□□ 0.76
COL18A1P39060 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC19.8■□□□□ 0.76
COL18A1P39060 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC19.8■□□□□ 0.76
COL18A1P39060 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC19.8■□□□□ 0.76
COL18A1P39060 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL18A1P39060 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms