Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.68□□□□□ -0.06
ATG4BQ9Y4P1 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 NORAD-201ENST00000565493 5339 ntBASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 AC036164.1-201ENST00000570544 333 ntBASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ATG4BQ9Y4P1 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 MEP1AP4-201ENST00000423244 1087 ntBASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
ATG4BQ9Y4P1 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms