Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC60Q8IWA6 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC60Q8IWA6 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 NFIC-211ENST00000641145 8399 ntBASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 AL645937.2-201ENST00000396808 931 ntBASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 AL590640.2-201ENST00000457038 527 ntBASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 AC078819.1-201ENST00000547454 765 ntBASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 AC012085.1-201ENST00000548270 765 ntBASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 RHOXF1P1-202ENST00000635473 501 ntBASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 KRT8P14-201ENST00000414254 1442 ntBASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC60Q8IWA6 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 AC132872.4-202ENST00000622924 2756 ntBASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms