Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.24□□□□□ -0.13
USP43Q70EL4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.24□□□□□ -0.13
USP43Q70EL4 DNAJB3-202ENST00000449667 1266 ntBASIC14.24□□□□□ -0.13
USP43Q70EL4 AC108751.1-201ENST00000490852 363 ntBASIC14.24□□□□□ -0.13
USP43Q70EL4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.24□□□□□ -0.13
USP43Q70EL4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC14.24□□□□□ -0.13
USP43Q70EL4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.24□□□□□ -0.13
USP43Q70EL4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.24□□□□□ -0.13
USP43Q70EL4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.24□□□□□ -0.13
USP43Q70EL4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.24□□□□□ -0.13
USP43Q70EL4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.24□□□□□ -0.13
USP43Q70EL4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.24□□□□□ -0.13
USP43Q70EL4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.24□□□□□ -0.13
USP43Q70EL4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.24□□□□□ -0.13
USP43Q70EL4 AL589182.2-201ENST00000619332 1049 ntBASIC14.24□□□□□ -0.13
USP43Q70EL4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.24□□□□□ -0.13
USP43Q70EL4 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP43Q70EL4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP43Q70EL4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
USP43Q70EL4 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
USP43Q70EL4 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.24□□□□□ -0.13
USP43Q70EL4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.24□□□□□ -0.13
USP43Q70EL4 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
USP43Q70EL4 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
USP43Q70EL4 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.24□□□□□ -0.13
USP43Q70EL4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP43Q70EL4 NCF1C-201ENST00000438382 1427 ntBASIC14.24□□□□□ -0.13
USP43Q70EL4 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP43Q70EL4 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP43Q70EL4 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 HSPA7-201ENST00000445535 1927 ntBASIC14.23□□□□□ -0.13
USP43Q70EL4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 AC073621.1-201ENST00000392730 636 ntBASIC14.23□□□□□ -0.13
USP43Q70EL4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 FAM8A3P-201ENST00000427218 844 ntBASIC14.23□□□□□ -0.13
USP43Q70EL4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 BX005266.1-201ENST00000473402 457 ntBASIC14.23□□□□□ -0.13
USP43Q70EL4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.23□□□□□ -0.13
USP43Q70EL4 AC005829.1-201ENST00000570002 483 ntBASIC14.23□□□□□ -0.13
USP43Q70EL4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.23□□□□□ -0.13
USP43Q70EL4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.23□□□□□ -0.13
USP43Q70EL4 WASH6P-202ENST00000359512 1437 ntBASIC14.23□□□□□ -0.13
USP43Q70EL4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
USP43Q70EL4 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP43Q70EL4 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP43Q70EL4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
USP43Q70EL4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
USP43Q70EL4 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
USP43Q70EL4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.22□□□□□ -0.13
USP43Q70EL4 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
USP43Q70EL4 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.22□□□□□ -0.13
USP43Q70EL4 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.22□□□□□ -0.13
USP43Q70EL4 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
USP43Q70EL4 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
USP43Q70EL4 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP43Q70EL4 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP43Q70EL4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP43Q70EL4 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
USP43Q70EL4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
USP43Q70EL4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.22□□□□□ -0.13
USP43Q70EL4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
USP43Q70EL4 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.22□□□□□ -0.13
USP43Q70EL4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
USP43Q70EL4 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.22□□□□□ -0.13
USP43Q70EL4 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms