Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 HNRNPA1P13-201ENST00000510646 963 ntBASIC18■□□□□ 0.47
CCDC144BQ3MJ40 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 AC243562.2-201ENST00000561247 970 ntBASIC18■□□□□ 0.47
CCDC144BQ3MJ40 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 BOLA2P3-201ENST00000404566 256 ntBASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 AC104989.1-201ENST00000519711 778 ntBASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 AC018665.1-201ENST00000622927 1362 ntBASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 TCAF2P1-201ENST00000291129 2421 ntBASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC144BQ3MJ40 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 KRT8P22-201ENST00000562317 1415 ntBASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 REXO1L6P-201ENST00000603433 1515 ntBASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 AC074338.1-201ENST00000416825 156 ntBASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 AL442647.2-201ENST00000429864 857 ntBASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 KRT43P-201ENST00000434019 910 ntBASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 TARDBPP1-201ENST00000442013 1203 ntBASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 AC245100.5-201ENST00000452108 331 ntBASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC144BQ3MJ40 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms