Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 SPDYE17-201ENST00000412399 783 ntBASIC14.65□□□□□ -0.06
RFX3P48380 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 EEF1DP4-201ENST00000446006 880 ntBASIC14.65□□□□□ -0.06
RFX3P48380 HLA-V-204ENST00000476601 1289 ntBASIC14.65□□□□□ -0.06
RFX3P48380 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 HNRNPUP1-201ENST00000554987 333 ntBASIC14.65□□□□□ -0.06
RFX3P48380 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.65□□□□□ -0.06
RFX3P48380 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 TEX28P1-201ENST00000613479 1221 ntBASIC14.65□□□□□ -0.06
RFX3P48380 TEX28P2-201ENST00000617764 1221 ntBASIC14.65□□□□□ -0.06
RFX3P48380 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 TNRC18P2-201ENST00000417666 2714 ntBASIC14.65□□□□□ -0.06
RFX3P48380 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
RFX3P48380 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RFX3P48380 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
RFX3P48380 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.65□□□□□ -0.06
RFX3P48380 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.65□□□□□ -0.07
RFX3P48380 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 SSR4P1-203ENST00000599569 2260 ntBASIC14.64□□□□□ -0.07
RFX3P48380 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.64□□□□□ -0.07
RFX3P48380 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.64□□□□□ -0.07
RFX3P48380 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
RFX3P48380 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
RFX3P48380 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.64□□□□□ -0.07
RFX3P48380 FO393414.2-201ENST00000405153 598 ntBASIC14.64□□□□□ -0.07
RFX3P48380 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.64□□□□□ -0.07
RFX3P48380 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.64□□□□□ -0.07
RFX3P48380 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.64□□□□□ -0.07
RFX3P48380 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.64□□□□□ -0.07
RFX3P48380 AC097493.3-201ENST00000509725 367 ntBASIC14.64□□□□□ -0.07
RFX3P48380 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.64□□□□□ -0.07
RFX3P48380 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.64□□□□□ -0.07
RFX3P48380 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 AL033527.5-202ENST00000641632 1098 ntBASIC14.64□□□□□ -0.07
RFX3P48380 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.64□□□□□ -0.07
RFX3P48380 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.64□□□□□ -0.07
RFX3P48380 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.64□□□□□ -0.07
RFX3P48380 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.64□□□□□ -0.07
RFX3P48380 AC127383.1-201ENST00000444697 1800 ntBASIC14.64□□□□□ -0.07
RFX3P48380 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.64□□□□□ -0.07
RFX3P48380 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RFX3P48380 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.64□□□□□ -0.07
RFX3P48380 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.63□□□□□ -0.07
RFX3P48380 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.63□□□□□ -0.07
RFX3P48380 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.63□□□□□ -0.07
RFX3P48380 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms