Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CHRNA3P32297 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 ZBED1P1-201ENST00000502364 1930 ntBASIC16.4■□□□□ 0.22
CHRNA3P32297 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.4■□□□□ 0.22
CHRNA3P32297 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.4■□□□□ 0.22
CHRNA3P32297 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CHRNA3P32297 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 AC026748.1-201ENST00000624349 3251 ntBASIC16.4■□□□□ 0.22
CHRNA3P32297 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CHRNA3P32297 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.4■□□□□ 0.22
CHRNA3P32297 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CHRNA3P32297 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.22
CHRNA3P32297 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.39■□□□□ 0.22
CHRNA3P32297 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CHRNA3P32297 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CHRNA3P32297 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 CYP4F24P-201ENST00000586049 1580 ntBASIC16.39■□□□□ 0.21
CHRNA3P32297 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.39■□□□□ 0.21
CHRNA3P32297 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.39■□□□□ 0.21
CHRNA3P32297 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.39■□□□□ 0.21
CHRNA3P32297 RPL37AP1-201ENST00000412502 279 ntBASIC16.39■□□□□ 0.21
CHRNA3P32297 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.39■□□□□ 0.21
CHRNA3P32297 TSSK5P-201ENST00000423978 907 ntBASIC16.39■□□□□ 0.21
CHRNA3P32297 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.39■□□□□ 0.21
CHRNA3P32297 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 TSPY16P-201ENST00000449843 468 ntBASIC16.39■□□□□ 0.21
CHRNA3P32297 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.39■□□□□ 0.21
CHRNA3P32297 AC004890.2-204ENST00000481968 304 ntBASIC16.39■□□□□ 0.21
CHRNA3P32297 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.39■□□□□ 0.21
CHRNA3P32297 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.39■□□□□ 0.21
CHRNA3P32297 AL079307.3-201ENST00000556114 283 ntBASIC16.39■□□□□ 0.21
CHRNA3P32297 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.39■□□□□ 0.21
CHRNA3P32297 TEX28P1-201ENST00000613479 1221 ntBASIC16.39■□□□□ 0.21
CHRNA3P32297 TEX28P2-201ENST00000617764 1221 ntBASIC16.39■□□□□ 0.21
CHRNA3P32297 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CHRNA3P32297 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
CHRNA3P32297 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.39■□□□□ 0.21
CHRNA3P32297 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.39■□□□□ 0.21
CHRNA3P32297 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.39■□□□□ 0.21
CHRNA3P32297 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CHRNA3P32297 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CHRNA3P32297 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHRNA3P32297 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.38■□□□□ 0.21
CHRNA3P32297 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CHRNA3P32297 LINC00552-201ENST00000625151 2579 ntBASIC16.38■□□□□ 0.21
CHRNA3P32297 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CHRNA3P32297 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.38■□□□□ 0.21
CHRNA3P32297 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.38■□□□□ 0.21
CHRNA3P32297 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 AL139010.1-201ENST00000454878 894 ntBASIC16.38■□□□□ 0.21
CHRNA3P32297 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.38■□□□□ 0.21
CHRNA3P32297 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.38■□□□□ 0.21
CHRNA3P32297 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
CHRNA3P32297 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.38■□□□□ 0.21
CHRNA3P32297 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.38■□□□□ 0.21
CHRNA3P32297 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CHRNA3P32297 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.38■□□□□ 0.21
CHRNA3P32297 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.38■□□□□ 0.21
CHRNA3P32297 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHRNA3P32297 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CHRNA3P32297 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms