Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ACKR1-201ENST00000368121 1240 ntBASIC16.31■□□□□ 0.2
BDNFP23560 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.31■□□□□ 0.2
BDNFP23560 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 KRT43P-201ENST00000434019 910 ntBASIC16.31■□□□□ 0.2
BDNFP23560 AC012441.1-201ENST00000446669 685 ntBASIC16.31■□□□□ 0.2
BDNFP23560 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.31■□□□□ 0.2
BDNFP23560 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 AL359881.2-201ENST00000602973 570 ntBASIC16.31■□□□□ 0.2
BDNFP23560 BX539320.1-201ENST00000623759 877 ntBASIC16.31■□□□□ 0.2
BDNFP23560 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
BDNFP23560 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.31■□□□□ 0.2
BDNFP23560 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
BDNFP23560 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
BDNFP23560 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.3■□□□□ 0.2
BDNFP23560 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.3■□□□□ 0.2
BDNFP23560 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
BDNFP23560 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.3■□□□□ 0.2
BDNFP23560 AC005229.1-201ENST00000392885 409 ntBASIC16.3■□□□□ 0.2
BDNFP23560 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 AL355864.2-201ENST00000447420 863 ntBASIC16.3■□□□□ 0.2
BDNFP23560 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.3■□□□□ 0.2
BDNFP23560 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.3■□□□□ 0.2
BDNFP23560 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 AC022137.2-201ENST00000503482 481 ntBASIC16.3■□□□□ 0.2
BDNFP23560 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.3■□□□□ 0.2
BDNFP23560 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.3■□□□□ 0.2
BDNFP23560 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.3■□□□□ 0.2
BDNFP23560 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.3■□□□□ 0.2
BDNFP23560 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
BDNFP23560 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BDNFP23560 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
BDNFP23560 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 MIR658-201ENST00000385210 100 ntBASIC16.29■□□□□ 0.2
BDNFP23560 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
BDNFP23560 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 MIR1909-201ENST00000411312 80 ntBASIC16.29■□□□□ 0.2
BDNFP23560 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 AC022210.1-201ENST00000449856 793 ntBASIC16.29■□□□□ 0.2
BDNFP23560 AC106760.1-201ENST00000508690 800 ntBASIC16.29■□□□□ 0.2
BDNFP23560 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
BDNFP23560 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.29■□□□□ 0.2
BDNFP23560 SNX29P1-201ENST00000548357 1007 ntBASIC16.29■□□□□ 0.2
BDNFP23560 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.29■□□□□ 0.2
BDNFP23560 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms