Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 AC087499.6-201ENST00000411576 835 ntBASIC15.29■□□□□ 0.04
CDH3P22223 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH3P22223 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH3P22223 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH3P22223 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH3P22223 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
CDH3P22223 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.29■□□□□ 0.04
CDH3P22223 SPDYE22P-201ENST00000582158 798 ntBASIC15.29■□□□□ 0.04
CDH3P22223 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CDH3P22223 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.29■□□□□ 0.04
CDH3P22223 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.29■□□□□ 0.04
CDH3P22223 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.29■□□□□ 0.04
CDH3P22223 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CDH3P22223 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.29■□□□□ 0.04
CDH3P22223 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH3P22223 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CDH3P22223 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
CDH3P22223 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH3P22223 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
CDH3P22223 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH3P22223 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
CDH3P22223 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 Z97205.2-201ENST00000564697 1639 ntBASIC15.28■□□□□ 0.04
CDH3P22223 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 AL137784.3-201ENST00000623858 2288 ntBASIC15.28■□□□□ 0.04
CDH3P22223 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CDH3P22223 AL391825.1-201ENST00000457671 1364 ntBASIC15.28■□□□□ 0.04
CDH3P22223 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.28■□□□□ 0.04
CDH3P22223 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 MEP1AP4-201ENST00000423244 1087 ntBASIC15.28■□□□□ 0.04
CDH3P22223 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.28■□□□□ 0.04
CDH3P22223 AL589987.1-201ENST00000453380 819 ntBASIC15.28■□□□□ 0.04
CDH3P22223 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.28■□□□□ 0.04
CDH3P22223 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.28■□□□□ 0.04
CDH3P22223 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.28■□□□□ 0.04
CDH3P22223 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.28■□□□□ 0.04
CDH3P22223 AC140912.1-201ENST00000577171 1054 ntBASIC15.28■□□□□ 0.04
CDH3P22223 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.28■□□□□ 0.04
CDH3P22223 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.28■□□□□ 0.04
CDH3P22223 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 AC004790.1-201ENST00000612686 536 ntBASIC15.28■□□□□ 0.04
CDH3P22223 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CDH3P22223 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 AL358472.5-202ENST00000641448 1267 ntBASIC15.28■□□□□ 0.04
CDH3P22223 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
CDH3P22223 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH3P22223 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH3P22223 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CDH3P22223 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CDH3P22223 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CDH3P22223 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
CDH3P22223 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CDH3P22223 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CDH3P22223 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CDH3P22223 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CDH3P22223 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CDH3P22223 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.27■□□□□ 0.04
CDH3P22223 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH3P22223 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms