Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 AL008707.1-201ENST00000422498 534 ntBASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 AC106820.3-201ENST00000561653 397 ntBASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 SPCS2P2-201ENST00000603270 608 ntBASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 CHMP1AP1-201ENST00000445563 662 ntBASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 AC022217.1-201ENST00000521069 738 ntBASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 MIR3907-201ENST00000579424 151 ntBASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 MIR5572-201ENST00000583188 137 ntBASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC20.33■□□□□ 0.85
CSB-PGBD3P0DP91 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
CSB-PGBD3P0DP91 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
CSB-PGBD3P0DP91 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CSB-PGBD3P0DP91 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CSB-PGBD3P0DP91 KRT8P29-201ENST00000420409 1371 ntBASIC20.33■□□□□ 0.84
CSB-PGBD3P0DP91 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CSB-PGBD3P0DP91 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CSB-PGBD3P0DP91 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 MIR33B-201ENST00000385104 96 ntBASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AC011742.3-201ENST00000439053 820 ntBASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 RNMTL1P1-201ENST00000454103 560 ntBASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 OARD1-204ENST00000464633 717 ntTSL 2 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 EID1-202ENST00000560490 584 ntTSL 3 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC20.32■□□□□ 0.84
CSB-PGBD3P0DP91 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms