Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 RPS9P1-201ENST00000419943 583 ntBASIC16.7■□□□□ 0.26
LRCH3Q96II8 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.7■□□□□ 0.26
LRCH3Q96II8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LRCH3Q96II8 AL031731.1-201ENST00000642131 2094 ntBASIC16.69■□□□□ 0.26
LRCH3Q96II8 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 RNMTL1P1-201ENST00000454103 560 ntBASIC16.69■□□□□ 0.26
LRCH3Q96II8 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 AP002803.1-201ENST00000528836 498 ntBASIC16.69■□□□□ 0.26
LRCH3Q96II8 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 DNM1P30-201ENST00000563586 452 ntBASIC16.69■□□□□ 0.26
LRCH3Q96II8 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 FO393412.1-201ENST00000619841 382 ntBASIC16.69■□□□□ 0.26
LRCH3Q96II8 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 LINC02012-201ENST00000608206 1725 ntBASIC16.69■□□□□ 0.26
LRCH3Q96II8 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 AL603756.1-201ENST00000606511 2163 ntBASIC16.69■□□□□ 0.26
LRCH3Q96II8 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 AC078925.2-201ENST00000624013 1973 ntBASIC16.69■□□□□ 0.26
LRCH3Q96II8 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.69■□□□□ 0.26
LRCH3Q96II8 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRCH3Q96II8 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 KRT8P29-201ENST00000420409 1371 ntBASIC16.68■□□□□ 0.26
LRCH3Q96II8 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms