Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 REXO1L2P-201ENST00000425429 2069 ntBASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AL359258.3-201ENST00000622910 2331 ntBASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AP000344.2-201ENST00000512987 629 ntBASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AL079307.3-201ENST00000556114 283 ntBASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AC004835.2-201ENST00000603762 682 ntBASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.12■□□□□ 0.17
ATG4AQ8WYN0 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AC112482.1-201ENST00000492080 688 ntBASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AL035456.1-201ENST00000456064 1369 ntBASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 WASH3P-207ENST00000560956 1394 ntBASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 FO538757.1-201ENST00000623083 1397 ntBASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms