Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 NORAD-201ENST00000565493 5339 ntBASIC18.74■□□□□ 0.59
VPS53Q5VIR6 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 AC007541.1-201ENST00000570282 1469 ntBASIC18.74■□□□□ 0.59
VPS53Q5VIR6 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 API5-211ENST00000534695 560 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS53Q5VIR6 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 TNRC18P2-201ENST00000417666 2714 ntBASIC18.73■□□□□ 0.59
VPS53Q5VIR6 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 AC098850.1-201ENST00000419919 790 ntBASIC18.73■□□□□ 0.59
VPS53Q5VIR6 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 AC190387.1-201ENST00000551683 408 ntBASIC18.73■□□□□ 0.59
VPS53Q5VIR6 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS53Q5VIR6 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS53Q5VIR6 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms