Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 AC013553.1-201ENST00000560906 267 ntBASIC10.83□□□□□ -0.68
PRKDCP78527 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC10.83□□□□□ -0.68
PRKDCP78527 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
PRKDCP78527 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC10.83□□□□□ -0.68
PRKDCP78527 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC10.83□□□□□ -0.68
PRKDCP78527 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
PRKDCP78527 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
PRKDCP78527 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC10.82□□□□□ -0.68
PRKDCP78527 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC10.82□□□□□ -0.68
PRKDCP78527 CD164-210ENST00000512821 964 ntTSL 2 BASIC10.82□□□□□ -0.68
PRKDCP78527 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC10.82□□□□□ -0.68
PRKDCP78527 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC10.82□□□□□ -0.68
PRKDCP78527 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC10.82□□□□□ -0.68
PRKDCP78527 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
PRKDCP78527 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 AC009090.5-201ENST00000624886 2285 ntBASIC10.82□□□□□ -0.68
PRKDCP78527 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
PRKDCP78527 CSNK1G2P1-201ENST00000442675 955 ntBASIC10.82□□□□□ -0.68
PRKDCP78527 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC10.82□□□□□ -0.68
PRKDCP78527 AC092896.1-201ENST00000465850 380 ntBASIC10.82□□□□□ -0.68
PRKDCP78527 CISD2-202ENST00000503643 808 ntTSL 2 BASIC10.82□□□□□ -0.68
PRKDCP78527 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC10.82□□□□□ -0.68
PRKDCP78527 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 AC254633.1-201ENST00000606790 345 ntBASIC10.82□□□□□ -0.68
PRKDCP78527 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 AC013726.1-201ENST00000563747 2285 ntBASIC10.82□□□□□ -0.68
PRKDCP78527 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC10.82□□□□□ -0.68
PRKDCP78527 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC10.82□□□□□ -0.68
PRKDCP78527 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 CFL1P6-201ENST00000400899 494 ntBASIC10.82□□□□□ -0.68
PRKDCP78527 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC10.82□□□□□ -0.68
PRKDCP78527 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC10.82□□□□□ -0.68
PRKDCP78527 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC10.82□□□□□ -0.68
PRKDCP78527 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
PRKDCP78527 MIR6893-201ENST00000613458 69 ntBASIC10.82□□□□□ -0.68
PRKDCP78527 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 PHB-210ENST00000511832 1509 ntTSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 NHP2P1-201ENST00000335274 462 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
PRKDCP78527 AHCYP3-201ENST00000420053 1279 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC10.81□□□□□ -0.68
PRKDCP78527 RPL35P9-201ENST00000446059 350 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 RPSAP15-201ENST00000448168 861 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 AC100827.2-201ENST00000563214 1194 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 AL133373.2-201ENST00000623187 2828 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 AL592076.1-201ENST00000424448 303 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 KRT18P46-201ENST00000435568 1279 ntBASIC10.81□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms