Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 AL133338.1-201ENST00000565695 1517 ntBASIC12.63□□□□□ -0.39
LMO4P61968 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.63□□□□□ -0.39
LMO4P61968 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
LMO4P61968 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC12.63□□□□□ -0.39
LMO4P61968 FAM8A4P-201ENST00000435433 1213 ntBASIC12.63□□□□□ -0.39
LMO4P61968 AL591846.1-201ENST00000451736 433 ntBASIC12.63□□□□□ -0.39
LMO4P61968 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 ZNF767P-206ENST00000513792 565 ntBASIC12.63□□□□□ -0.39
LMO4P61968 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC12.63□□□□□ -0.39
LMO4P61968 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC12.63□□□□□ -0.39
LMO4P61968 EEF1DP1-201ENST00000585891 896 ntBASIC12.63□□□□□ -0.39
LMO4P61968 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.63□□□□□ -0.39
LMO4P61968 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC12.63□□□□□ -0.39
LMO4P61968 AC243960.2-201ENST00000600996 747 ntBASIC12.63□□□□□ -0.39
LMO4P61968 AL118558.3-201ENST00000607414 1079 ntBASIC12.63□□□□□ -0.39
LMO4P61968 PRKN-211ENST00000615065 261 ntTSL 5 BASIC12.63□□□□□ -0.39
LMO4P61968 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.63□□□□□ -0.39
LMO4P61968 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
LMO4P61968 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC12.63□□□□□ -0.39
LMO4P61968 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
LMO4P61968 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 AC015818.8-201ENST00000587907 1519 ntBASIC12.62□□□□□ -0.39
LMO4P61968 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 PCDHA1-201ENST00000378133 2726 ntBASIC12.62□□□□□ -0.39
LMO4P61968 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.62□□□□□ -0.39
LMO4P61968 AL365203.3-201ENST00000609742 2057 ntBASIC12.62□□□□□ -0.39
LMO4P61968 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC12.62□□□□□ -0.39
LMO4P61968 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.62□□□□□ -0.39
LMO4P61968 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.62□□□□□ -0.39
LMO4P61968 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 MIR1247-201ENST00000408206 136 ntBASIC12.62□□□□□ -0.39
LMO4P61968 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
LMO4P61968 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC12.62□□□□□ -0.39
LMO4P61968 POM121L8P-201ENST00000417732 1281 ntBASIC12.62□□□□□ -0.39
LMO4P61968 GPAA1P2-201ENST00000417923 928 ntBASIC12.62□□□□□ -0.39
LMO4P61968 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC12.62□□□□□ -0.39
LMO4P61968 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC12.62□□□□□ -0.39
LMO4P61968 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC12.62□□□□□ -0.39
LMO4P61968 HLA-K-203ENST00000430151 1046 ntBASIC12.62□□□□□ -0.39
LMO4P61968 AC006033.1-201ENST00000440505 426 ntBASIC12.62□□□□□ -0.39
LMO4P61968 POM121L9P-203ENST00000441984 1285 ntBASIC12.62□□□□□ -0.39
LMO4P61968 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LMO4P61968 AC099548.2-209ENST00000480264 625 ntBASIC12.62□□□□□ -0.39
LMO4P61968 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
LMO4P61968 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
LMO4P61968 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC12.62□□□□□ -0.39
LMO4P61968 AC103810.3-201ENST00000583567 96 ntBASIC12.62□□□□□ -0.39
LMO4P61968 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
LMO4P61968 CYGB-203ENST00000589145 788 ntTSL 3 BASIC12.62□□□□□ -0.39
LMO4P61968 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms