Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC012441.2-201ENST00000444843 739 ntBASIC19.9■□□□□ 0.78
COL18A1P39060 RN7SL258P-201ENST00000478664 300 ntBASIC19.9■□□□□ 0.78
COL18A1P39060 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC19.9■□□□□ 0.78
COL18A1P39060 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC19.9■□□□□ 0.78
COL18A1P39060 AC008825.2-201ENST00000603374 718 ntBASIC19.9■□□□□ 0.78
COL18A1P39060 MIR6720-201ENST00000611664 98 ntBASIC19.9■□□□□ 0.78
COL18A1P39060 MIR6756-201ENST00000616240 63 ntBASIC19.9■□□□□ 0.78
COL18A1P39060 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC19.9■□□□□ 0.78
COL18A1P39060 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC19.9■□□□□ 0.78
COL18A1P39060 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.9■□□□□ 0.78
COL18A1P39060 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.9■□□□□ 0.78
COL18A1P39060 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC19.9■□□□□ 0.78
COL18A1P39060 PTK2-225ENST00000520892 571 ntTSL 4 BASIC19.9■□□□□ 0.78
COL18A1P39060 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC19.9■□□□□ 0.78
COL18A1P39060 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
COL18A1P39060 RPS15-202ENST00000585665 467 ntTSL 3 BASIC19.9■□□□□ 0.78
COL18A1P39060 DDX5-235ENST00000630471 473 ntTSL 4 BASIC19.9■□□□□ 0.78
COL18A1P39060 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
COL18A1P39060 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL18A1P39060 LINC01165-201ENST00000445190 1623 ntBASIC19.9■□□□□ 0.78
COL18A1P39060 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
COL18A1P39060 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL18A1P39060 AC010491.1-201ENST00000563101 2797 ntBASIC19.89■□□□□ 0.78
COL18A1P39060 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL18A1P39060 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC19.89■□□□□ 0.78
COL18A1P39060 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL18A1P39060 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
COL18A1P39060 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19.89■□□□□ 0.77
COL18A1P39060 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.89■□□□□ 0.77
COL18A1P39060 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC19.89■□□□□ 0.77
COL18A1P39060 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC19.89■□□□□ 0.77
COL18A1P39060 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
COL18A1P39060 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
COL18A1P39060 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC19.89■□□□□ 0.77
COL18A1P39060 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC19.89■□□□□ 0.77
COL18A1P39060 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC19.89■□□□□ 0.77
COL18A1P39060 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC19.89■□□□□ 0.77
COL18A1P39060 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC19.89■□□□□ 0.77
COL18A1P39060 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
COL18A1P39060 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL18A1P39060 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC19.89■□□□□ 0.77
COL18A1P39060 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC19.89■□□□□ 0.77
COL18A1P39060 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.89■□□□□ 0.77
COL18A1P39060 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC19.88■□□□□ 0.77
COL18A1P39060 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC19.88■□□□□ 0.77
COL18A1P39060 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 AC018629.1-201ENST00000623381 1736 ntBASIC19.88■□□□□ 0.77
COL18A1P39060 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL18A1P39060 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC19.88■□□□□ 0.77
COL18A1P39060 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC19.88■□□□□ 0.77
COL18A1P39060 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
COL18A1P39060 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC19.88■□□□□ 0.77
COL18A1P39060 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
COL18A1P39060 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
COL18A1P39060 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC19.88■□□□□ 0.77
COL18A1P39060 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.88■□□□□ 0.77
COL18A1P39060 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 AC239868.1-201ENST00000369385 493 ntBASIC19.88■□□□□ 0.77
COL18A1P39060 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL18A1P39060 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL18A1P39060 NME2-201ENST00000393183 568 ntTSL 2 BASIC19.88■□□□□ 0.77
COL18A1P39060 CICP12-201ENST00000455801 843 ntBASIC19.88■□□□□ 0.77
COL18A1P39060 GCOM2-201ENST00000509133 1104 ntBASIC19.88■□□□□ 0.77
COL18A1P39060 PHBP15-201ENST00000574228 665 ntBASIC19.88■□□□□ 0.77
COL18A1P39060 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC19.88■□□□□ 0.77
COL18A1P39060 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC19.88■□□□□ 0.77
COL18A1P39060 HLA-C-210ENST00000640219 976 ntBASIC19.88■□□□□ 0.77
COL18A1P39060 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.87■□□□□ 0.77
COL18A1P39060 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms