Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SCN4AP35499 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 REXO1L5P-201ENST00000622260 2098 ntBASIC17.82■□□□□ 0.44
SCN4AP35499 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
SCN4AP35499 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SCN4AP35499 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
SCN4AP35499 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
SCN4AP35499 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN4AP35499 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SCN4AP35499 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SCN4AP35499 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SCN4AP35499 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 BANF1P3-201ENST00000412556 261 ntBASIC17.82■□□□□ 0.44
SCN4AP35499 ACTBP7-201ENST00000418351 1124 ntBASIC17.82■□□□□ 0.44
SCN4AP35499 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SCN4AP35499 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN4AP35499 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN4AP35499 AC114947.1-202ENST00000514136 344 ntBASIC17.82■□□□□ 0.44
SCN4AP35499 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
SCN4AP35499 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
SCN4AP35499 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SCN4AP35499 MIR3180-2-201ENST00000581748 88 ntBASIC17.82■□□□□ 0.44
SCN4AP35499 AC020910.5-201ENST00000623668 1865 ntBASIC17.82■□□□□ 0.44
SCN4AP35499 PLS3-210ENST00000626746 216 ntTSL 4 BASIC17.82■□□□□ 0.44
SCN4AP35499 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.81■□□□□ 0.44
SCN4AP35499 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN4AP35499 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
SCN4AP35499 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN4AP35499 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN4AP35499 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN4AP35499 TSPY25P-201ENST00000429463 745 ntBASIC17.81■□□□□ 0.44
SCN4AP35499 GCSHP3-201ENST00000431120 391 ntBASIC17.81■□□□□ 0.44
SCN4AP35499 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN4AP35499 DDX39AP1-201ENST00000445147 1181 ntBASIC17.81■□□□□ 0.44
SCN4AP35499 RN7SL396P-201ENST00000471086 295 ntBASIC17.81■□□□□ 0.44
SCN4AP35499 AC026434.2-201ENST00000506094 1078 ntBASIC17.81■□□□□ 0.44
SCN4AP35499 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN4AP35499 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN4AP35499 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN4AP35499 AC027139.1-201ENST00000565286 951 ntBASIC17.81■□□□□ 0.44
SCN4AP35499 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN4AP35499 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
SCN4AP35499 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN4AP35499 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN4AP35499 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SCN4AP35499 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN4AP35499 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.81■□□□□ 0.44
SCN4AP35499 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN4AP35499 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
SCN4AP35499 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.8■□□□□ 0.44
SCN4AP35499 RAN-210ENST00000541630 1475 ntTSL 2 BASIC17.8■□□□□ 0.44
SCN4AP35499 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC17.8■□□□□ 0.44
SCN4AP35499 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SCN4AP35499 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SCN4AP35499 STK16-203ENST00000409516 895 ntTSL 2 BASIC17.8■□□□□ 0.44
SCN4AP35499 XBP1P1-201ENST00000436573 652 ntBASIC17.8■□□□□ 0.44
SCN4AP35499 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.8■□□□□ 0.44
SCN4AP35499 AGPAT5P1-201ENST00000455855 1019 ntBASIC17.8■□□□□ 0.44
SCN4AP35499 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
SCN4AP35499 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SCN4AP35499 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN4AP35499 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SCN4AP35499 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
SCN4AP35499 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC17.79■□□□□ 0.44
SCN4AP35499 DBP-202ENST00000593500 712 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms