Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.39■□□□□ 0.37
CIITAP33076 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.39■□□□□ 0.37
CIITAP33076 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CIITAP33076 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.39■□□□□ 0.37
CIITAP33076 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.39■□□□□ 0.37
CIITAP33076 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.39■□□□□ 0.37
CIITAP33076 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.39■□□□□ 0.37
CIITAP33076 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.39■□□□□ 0.37
CIITAP33076 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.39■□□□□ 0.37
CIITAP33076 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CIITAP33076 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.39■□□□□ 0.37
CIITAP33076 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.39■□□□□ 0.37
CIITAP33076 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CIITAP33076 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CIITAP33076 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
CIITAP33076 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.38■□□□□ 0.37
CIITAP33076 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.38■□□□□ 0.37
CIITAP33076 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.38■□□□□ 0.37
CIITAP33076 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 RNU1-114P-201ENST00000365297 166 ntBASIC17.38■□□□□ 0.37
CIITAP33076 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.38■□□□□ 0.37
CIITAP33076 AC092933.1-201ENST00000393644 945 ntBASIC17.38■□□□□ 0.37
CIITAP33076 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CIITAP33076 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.38■□□□□ 0.37
CIITAP33076 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.38■□□□□ 0.37
CIITAP33076 KLF2P2-201ENST00000416807 1039 ntBASIC17.38■□□□□ 0.37
CIITAP33076 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.38■□□□□ 0.37
CIITAP33076 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.38■□□□□ 0.37
CIITAP33076 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.38■□□□□ 0.37
CIITAP33076 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.38■□□□□ 0.37
CIITAP33076 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.38■□□□□ 0.37
CIITAP33076 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CIITAP33076 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.38■□□□□ 0.37
CIITAP33076 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CIITAP33076 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CIITAP33076 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CIITAP33076 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.37■□□□□ 0.37
CIITAP33076 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 MROH4P-201ENST00000431302 1578 ntBASIC17.37■□□□□ 0.37
CIITAP33076 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
CIITAP33076 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.37■□□□□ 0.37
CIITAP33076 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.37■□□□□ 0.37
CIITAP33076 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.37■□□□□ 0.37
CIITAP33076 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.37■□□□□ 0.37
CIITAP33076 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CIITAP33076 ACTBP8-201ENST00000403258 1108 ntBASIC17.37■□□□□ 0.37
CIITAP33076 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.37■□□□□ 0.37
CIITAP33076 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.37■□□□□ 0.37
CIITAP33076 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.37■□□□□ 0.37
CIITAP33076 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.37■□□□□ 0.37
CIITAP33076 AC148477.4-201ENST00000613430 1793 ntBASIC17.37■□□□□ 0.37
CIITAP33076 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.37■□□□□ 0.37
CIITAP33076 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CIITAP33076 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CIITAP33076 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CIITAP33076 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms