Protein–RNA interactions for Protein: Q92890

UFD1, Ubiquitin recognition factor in ER-associated degradation protein 1, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1Q92890 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
UFD1Q92890 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.65■□□□□ 0.9
UFD1Q92890 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
UFD1Q92890 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.65■□□□□ 0.9
UFD1Q92890 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
UFD1Q92890 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC20.65■□□□□ 0.9
UFD1Q92890 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.64■□□□□ 0.9
UFD1Q92890 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
UFD1Q92890 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.64■□□□□ 0.9
UFD1Q92890 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
UFD1Q92890 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
UFD1Q92890 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
UFD1Q92890 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
UFD1Q92890 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.64■□□□□ 0.89
UFD1Q92890 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
UFD1Q92890 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
UFD1Q92890 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
UFD1Q92890 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
UFD1Q92890 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.64■□□□□ 0.89
UFD1Q92890 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UFD1Q92890 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UFD1Q92890 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.63■□□□□ 0.89
UFD1Q92890 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UFD1Q92890 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.63■□□□□ 0.89
UFD1Q92890 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UFD1Q92890 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.63■□□□□ 0.89
UFD1Q92890 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
UFD1Q92890 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
UFD1Q92890 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.62■□□□□ 0.89
UFD1Q92890 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
UFD1Q92890 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
UFD1Q92890 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UFD1Q92890 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UFD1Q92890 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UFD1Q92890 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UFD1Q92890 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
UFD1Q92890 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
UFD1Q92890 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UFD1Q92890 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
UFD1Q92890 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.61■□□□□ 0.89
UFD1Q92890 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
UFD1Q92890 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UFD1Q92890 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
UFD1Q92890 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
UFD1Q92890 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
UFD1Q92890 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
UFD1Q92890 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UFD1Q92890 AC233723.2-201ENST00000623798 2106 ntBASIC20.6■□□□□ 0.89
UFD1Q92890 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
UFD1Q92890 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.6■□□□□ 0.89
UFD1Q92890 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.6■□□□□ 0.89
UFD1Q92890 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
UFD1Q92890 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UFD1Q92890 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
UFD1Q92890 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UFD1Q92890 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.59■□□□□ 0.89
UFD1Q92890 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
UFD1Q92890 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UFD1Q92890 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
UFD1Q92890 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UFD1Q92890 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
UFD1Q92890 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UFD1Q92890 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
UFD1Q92890 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.58■□□□□ 0.89
UFD1Q92890 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UFD1Q92890 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
UFD1Q92890 DUX4L11-201ENST00000611504 1267 ntBASIC20.58■□□□□ 0.89
UFD1Q92890 DUX4L12-201ENST00000614593 1267 ntBASIC20.58■□□□□ 0.89
UFD1Q92890 DUX4L14-201ENST00000621227 1267 ntBASIC20.58■□□□□ 0.89
UFD1Q92890 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
UFD1Q92890 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.58■□□□□ 0.88
UFD1Q92890 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
UFD1Q92890 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
UFD1Q92890 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
UFD1Q92890 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
UFD1Q92890 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UFD1Q92890 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UFD1Q92890 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
UFD1Q92890 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.57■□□□□ 0.88
UFD1Q92890 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UFD1Q92890 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UFD1Q92890 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UFD1Q92890 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
UFD1Q92890 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.57■□□□□ 0.88
UFD1Q92890 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
UFD1Q92890 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
UFD1Q92890 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UFD1Q92890 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UFD1Q92890 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.56■□□□□ 0.88
UFD1Q92890 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UFD1Q92890 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.56■□□□□ 0.88
UFD1Q92890 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
UFD1Q92890 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
UFD1Q92890 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
UFD1Q92890 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UFD1Q92890 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.56■□□□□ 0.88
UFD1Q92890 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
UFD1Q92890 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UFD1Q92890 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UFD1Q92890 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms