Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00643Q86TS7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
LINC00643Q86TS7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC00643Q86TS7 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00643Q86TS7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00643Q86TS7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00643Q86TS7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC00643Q86TS7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00643Q86TS7 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00643Q86TS7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 ECEL1P1-201ENST00000373592 1742 ntBASIC14.62□□□□□ -0.07
LINC00643Q86TS7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC14.62□□□□□ -0.07
LINC00643Q86TS7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00643Q86TS7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 GUSBP5-202ENST00000510805 1989 ntBASIC14.6□□□□□ -0.07
LINC00643Q86TS7 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00643Q86TS7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00643Q86TS7 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
LINC00643Q86TS7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00643Q86TS7 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
LINC00643Q86TS7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00643Q86TS7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LINC00643Q86TS7 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
LINC00643Q86TS7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC14.58□□□□□ -0.07
LINC00643Q86TS7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
LINC00643Q86TS7 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
LINC00643Q86TS7 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LINC00643Q86TS7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC14.58□□□□□ -0.07
LINC00643Q86TS7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LINC00643Q86TS7 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC14.58□□□□□ -0.07
LINC00643Q86TS7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC14.58□□□□□ -0.07
LINC00643Q86TS7 AC142472.1-201ENST00000612013 1741 ntBASIC14.58□□□□□ -0.07
LINC00643Q86TS7 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
LINC00643Q86TS7 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00643Q86TS7 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00643Q86TS7 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00643Q86TS7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00643Q86TS7 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00643Q86TS7 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00643Q86TS7 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC00643Q86TS7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00643Q86TS7 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms