Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
RAPGEF3O95398 AC034268.1-201ENST00000441047 882 ntBASIC35.53■■■■□ 3.28
RAPGEF3O95398 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC35.53■■■■□ 3.28
RAPGEF3O95398 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC35.52■■■■□ 3.28
RAPGEF3O95398 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC35.52■■■■□ 3.28
RAPGEF3O95398 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 AC092171.4-201ENST00000609130 632 ntBASIC35.52■■■■□ 3.28
RAPGEF3O95398 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC35.52■■■■□ 3.28
RAPGEF3O95398 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC35.51■■■■□ 3.28
RAPGEF3O95398 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC35.51■■■■□ 3.28
RAPGEF3O95398 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC35.51■■■■□ 3.28
RAPGEF3O95398 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC35.51■■■■□ 3.28
RAPGEF3O95398 AL031602.1-201ENST00000633169 911 ntBASIC35.51■■■■□ 3.28
RAPGEF3O95398 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
RAPGEF3O95398 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
RAPGEF3O95398 AC099791.2-201ENST00000605725 427 ntBASIC35.5■■■■□ 3.27
RAPGEF3O95398 ID1-201ENST00000376105 1233 ntBASIC35.49■■■■□ 3.27
RAPGEF3O95398 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC35.49■■■■□ 3.27
RAPGEF3O95398 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
RAPGEF3O95398 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC35.49■■■■□ 3.27
RAPGEF3O95398 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
RAPGEF3O95398 AC011298.3-201ENST00000615796 283 ntBASIC35.49■■■■□ 3.27
RAPGEF3O95398 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
RAPGEF3O95398 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC35.48■■■■□ 3.27
RAPGEF3O95398 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC35.48■■■■□ 3.27
RAPGEF3O95398 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
RAPGEF3O95398 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC35.47■■■■□ 3.27
RAPGEF3O95398 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC35.47■■■■□ 3.27
RAPGEF3O95398 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC35.46■■■■□ 3.27
RAPGEF3O95398 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
RAPGEF3O95398 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC35.46■■■■□ 3.27
RAPGEF3O95398 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC35.46■■■■□ 3.27
RAPGEF3O95398 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
RAPGEF3O95398 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC35.46■■■■□ 3.27
RAPGEF3O95398 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
RAPGEF3O95398 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC35.45■■■■□ 3.27
RAPGEF3O95398 AC005703.6-201ENST00000623265 1329 ntBASIC35.45■■■■□ 3.27
RAPGEF3O95398 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
RAPGEF3O95398 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
RAPGEF3O95398 SLC47A1P1-202ENST00000449666 945 ntBASIC35.44■■■■□ 3.26
RAPGEF3O95398 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
RAPGEF3O95398 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
RAPGEF3O95398 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
RAPGEF3O95398 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
RAPGEF3O95398 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC35.43■■■■□ 3.26
RAPGEF3O95398 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
RAPGEF3O95398 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
RAPGEF3O95398 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
RAPGEF3O95398 AK1-201ENST00000223836 736 ntTSL 3 BASIC35.42■■■■□ 3.26
RAPGEF3O95398 AL138724.1-201ENST00000606771 1088 ntBASIC35.42■■■■□ 3.26
RAPGEF3O95398 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
RAPGEF3O95398 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
RAPGEF3O95398 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
RAPGEF3O95398 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
RAPGEF3O95398 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
RAPGEF3O95398 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC35.41■■■■□ 3.26
RAPGEF3O95398 AC004911.1-201ENST00000416316 871 ntBASIC35.4■■■■□ 3.26
RAPGEF3O95398 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC35.4■■■■□ 3.26
RAPGEF3O95398 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC35.4■■■■□ 3.26
RAPGEF3O95398 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC35.4■■■■□ 3.26
RAPGEF3O95398 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
RAPGEF3O95398 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
RAPGEF3O95398 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
RAPGEF3O95398 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC35.39■■■■□ 3.26
RAPGEF3O95398 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC35.38■■■■□ 3.25
RAPGEF3O95398 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC35.38■■■■□ 3.25
RAPGEF3O95398 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
RAPGEF3O95398 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC35.38■■■■□ 3.25
RAPGEF3O95398 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
RAPGEF3O95398 DLX3-202ENST00000512495 834 ntTSL 2 BASIC35.38■■■■□ 3.25
RAPGEF3O95398 DUX4L2-201ENST00000561772 1275 ntBASIC35.38■■■■□ 3.25
RAPGEF3O95398 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC35.38■■■■□ 3.25
RAPGEF3O95398 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC35.38■■■■□ 3.25
RAPGEF3O95398 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC35.38■■■■□ 3.25
RAPGEF3O95398 DUX4L6-201ENST00000626483 1275 ntBASIC35.38■■■■□ 3.25
RAPGEF3O95398 DUX4L1-201ENST00000627662 1275 ntBASIC35.38■■■■□ 3.25
RAPGEF3O95398 DUX4L8-201ENST00000629013 1275 ntBASIC35.38■■■■□ 3.25
RAPGEF3O95398 DUX4L3-201ENST00000630187 1275 ntBASIC35.38■■■■□ 3.25
RAPGEF3O95398 DUX4L7-201ENST00000630678 1275 ntBASIC35.38■■■■□ 3.25
RAPGEF3O95398 DUX4L5-201ENST00000630834 1275 ntBASIC35.38■■■■□ 3.25
RAPGEF3O95398 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
RAPGEF3O95398 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
RAPGEF3O95398 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
RAPGEF3O95398 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms