Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
CACNA1FO60840 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC29.64■■■□□ 2.34
CACNA1FO60840 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC29.64■■■□□ 2.34
CACNA1FO60840 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CACNA1FO60840 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
CACNA1FO60840 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC29.63■■■□□ 2.33
CACNA1FO60840 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC29.63■■■□□ 2.33
CACNA1FO60840 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CACNA1FO60840 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC29.63■■■□□ 2.33
CACNA1FO60840 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CACNA1FO60840 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC29.62■■■□□ 2.33
CACNA1FO60840 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CACNA1FO60840 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CACNA1FO60840 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
CACNA1FO60840 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC29.62■■■□□ 2.33
CACNA1FO60840 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CACNA1FO60840 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CACNA1FO60840 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CACNA1FO60840 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC29.61■■■□□ 2.33
CACNA1FO60840 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CACNA1FO60840 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CACNA1FO60840 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC29.61■■■□□ 2.33
CACNA1FO60840 TK2-202ENST00000417693 1046 ntTSL 2 BASIC29.61■■■□□ 2.33
CACNA1FO60840 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC29.61■■■□□ 2.33
CACNA1FO60840 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CACNA1FO60840 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC29.6■■■□□ 2.33
CACNA1FO60840 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CACNA1FO60840 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CACNA1FO60840 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CACNA1FO60840 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CACNA1FO60840 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CACNA1FO60840 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CACNA1FO60840 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CACNA1FO60840 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
CACNA1FO60840 AC138932.3-201ENST00000567634 1902 ntBASIC29.58■■■□□ 2.33
CACNA1FO60840 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC29.58■■■□□ 2.33
CACNA1FO60840 AC142381.3-201ENST00000568208 1670 ntBASIC29.58■■■□□ 2.33
CACNA1FO60840 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CACNA1FO60840 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
CACNA1FO60840 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC29.58■■■□□ 2.33
CACNA1FO60840 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
CACNA1FO60840 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CACNA1FO60840 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
CACNA1FO60840 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CACNA1FO60840 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
CACNA1FO60840 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC29.58■■■□□ 2.33
CACNA1FO60840 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CACNA1FO60840 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CACNA1FO60840 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CACNA1FO60840 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC29.57■■■□□ 2.32
CACNA1FO60840 GRAMD4P7-201ENST00000578182 1232 ntBASIC29.57■■■□□ 2.32
CACNA1FO60840 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
CACNA1FO60840 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
CACNA1FO60840 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
CACNA1FO60840 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC29.56■■■□□ 2.32
CACNA1FO60840 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC29.56■■■□□ 2.32
CACNA1FO60840 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
CACNA1FO60840 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC29.56■■■□□ 2.32
CACNA1FO60840 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC29.56■■■□□ 2.32
CACNA1FO60840 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC29.55■■■□□ 2.32
CACNA1FO60840 EXOG-217ENST00000630638 197 ntTSL 5 BASIC29.55■■■□□ 2.32
CACNA1FO60840 EED-207ENST00000528180 1745 ntTSL 5 BASIC29.55■■■□□ 2.32
CACNA1FO60840 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
CACNA1FO60840 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CACNA1FO60840 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
CACNA1FO60840 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC29.55■■■□□ 2.32
CACNA1FO60840 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC29.55■■■□□ 2.32
CACNA1FO60840 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
CACNA1FO60840 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
CACNA1FO60840 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
CACNA1FO60840 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC29.54■■■□□ 2.32
CACNA1FO60840 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC29.54■■■□□ 2.32
CACNA1FO60840 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC29.54■■■□□ 2.32
CACNA1FO60840 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC29.53■■■□□ 2.32
CACNA1FO60840 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC29.53■■■□□ 2.32
CACNA1FO60840 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC29.53■■■□□ 2.32
CACNA1FO60840 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CACNA1FO60840 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CACNA1FO60840 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CACNA1FO60840 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CACNA1FO60840 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CACNA1FO60840 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC29.53■■■□□ 2.32
CACNA1FO60840 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CACNA1FO60840 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC29.52■■■□□ 2.32
CACNA1FO60840 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC29.52■■■□□ 2.32
CACNA1FO60840 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CACNA1FO60840 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC29.52■■■□□ 2.32
CACNA1FO60840 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC29.52■■■□□ 2.32
CACNA1FO60840 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC29.52■■■□□ 2.32
CACNA1FO60840 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC29.52■■■□□ 2.32
CACNA1FO60840 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CACNA1FO60840 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC29.51■■■□□ 2.31
CACNA1FO60840 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC29.51■■■□□ 2.31
CACNA1FO60840 MTDHP2-201ENST00000601468 714 ntBASIC29.51■■■□□ 2.31
CACNA1FO60840 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CACNA1FO60840 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
CACNA1FO60840 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC29.5■■■□□ 2.31
CACNA1FO60840 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
CACNA1FO60840 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
CACNA1FO60840 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms