Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 ZBTB45P1-201ENST00000452761 1456 ntBASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 AC087481.3-201ENST00000602886 1894 ntBASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 GHSR-202ENST00000427970 912 ntBASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 AC017083.2-201ENST00000608069 979 ntBASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CHMP4AQ9BY43 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 AC018665.1-201ENST00000622927 1362 ntBASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 ACTBP8-201ENST00000403258 1108 ntBASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 ORC6-206ENST00000568364 888 ntTSL 5 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 AC132938.4-201ENST00000623835 848 ntBASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 TMBIM7P-203ENST00000641617 1718 ntBASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4AQ9BY43 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 AL139094.1-201ENST00000405549 1188 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 ARSEP1-201ENST00000420443 635 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms