Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 ACTG1P2-201ENST00000415776 1125 ntBASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 ACTG1P11-201ENST00000425411 1125 ntBASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 Z97180.1-201ENST00000445173 988 ntBASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 CSH2-206ENST00000560142 749 ntTSL 5 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AC004466.1-201ENST00000599515 1080 ntBASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AF254983.2-201ENST00000612331 135 ntBASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 AC091544.8-201ENST00000619490 361 ntBASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 PCDHB19P-201ENST00000570871 2371 ntBASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RTFDC1Q9BY42 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 AL118508.1-201ENST00000613502 2345 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 HLA-K-203ENST00000430151 1046 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 AC011742.3-201ENST00000439053 820 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 FTLP1-201ENST00000449155 526 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 AL161670.2-201ENST00000557650 1227 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 MIR4783-201ENST00000580343 82 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 AC005324.6-201ENST00000587972 613 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 AL133499.1-201ENST00000596207 608 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 AC084018.2-201ENST00000613093 2607 ntBASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTFDC1Q9BY42 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RTFDC1Q9BY42 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RTFDC1Q9BY42 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RTFDC1Q9BY42 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
RTFDC1Q9BY42 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
RTFDC1Q9BY42 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.58■□□□□ 0.57
RTFDC1Q9BY42 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RTFDC1Q9BY42 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
RTFDC1Q9BY42 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.58■□□□□ 0.56
RTFDC1Q9BY42 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
RTFDC1Q9BY42 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms