Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNA1P78396 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
CCNA1P78396 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CCNA1P78396 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNA1P78396 MIR769-201ENST00000390225 118 ntBASIC17.52■□□□□ 0.4
CCNA1P78396 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCNA1P78396 AL008707.1-201ENST00000422498 534 ntBASIC17.52■□□□□ 0.4
CCNA1P78396 SERPINA13P-202ENST00000478994 924 ntBASIC17.52■□□□□ 0.4
CCNA1P78396 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.52■□□□□ 0.4
CCNA1P78396 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.52■□□□□ 0.4
CCNA1P78396 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.52■□□□□ 0.4
CCNA1P78396 SAMD11P1-201ENST00000571429 661 ntBASIC17.52■□□□□ 0.4
CCNA1P78396 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.52■□□□□ 0.4
CCNA1P78396 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.52■□□□□ 0.4
CCNA1P78396 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNA1P78396 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCNA1P78396 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCNA1P78396 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNA1P78396 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNA1P78396 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCNA1P78396 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNA1P78396 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNA1P78396 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCNA1P78396 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
CCNA1P78396 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNA1P78396 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CCNA1P78396 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNA1P78396 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CCNA1P78396 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 POM121L8P-201ENST00000417732 1281 ntBASIC17.51■□□□□ 0.39
CCNA1P78396 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.51■□□□□ 0.39
CCNA1P78396 EIF3FP3-201ENST00000434851 1086 ntBASIC17.51■□□□□ 0.39
CCNA1P78396 POM121L9P-203ENST00000441984 1285 ntBASIC17.51■□□□□ 0.39
CCNA1P78396 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNA1P78396 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.51■□□□□ 0.39
CCNA1P78396 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCNA1P78396 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNA1P78396 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.51■□□□□ 0.39
CCNA1P78396 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.51■□□□□ 0.39
CCNA1P78396 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.51■□□□□ 0.39
CCNA1P78396 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCNA1P78396 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNA1P78396 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CCNA1P78396 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.51■□□□□ 0.39
CCNA1P78396 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNA1P78396 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.51■□□□□ 0.39
CCNA1P78396 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCNA1P78396 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CCNA1P78396 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.5■□□□□ 0.39
CCNA1P78396 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 LINC02447-202ENST00000501888 2146 ntBASIC17.5■□□□□ 0.39
CCNA1P78396 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCNA1P78396 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.5■□□□□ 0.39
CCNA1P78396 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.5■□□□□ 0.39
CCNA1P78396 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 AC073413.1-201ENST00000603927 732 ntBASIC17.5■□□□□ 0.39
CCNA1P78396 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC17.5■□□□□ 0.39
CCNA1P78396 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CCNA1P78396 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.5■□□□□ 0.39
CCNA1P78396 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCNA1P78396 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.5■□□□□ 0.39
CCNA1P78396 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms