Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.35■□□□□ 0.21
BDNFP23560 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 AC090616.6-203ENST00000579186 1945 ntBASIC16.35■□□□□ 0.21
BDNFP23560 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
BDNFP23560 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
BDNFP23560 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.35■□□□□ 0.21
BDNFP23560 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.35■□□□□ 0.21
BDNFP23560 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.35■□□□□ 0.21
BDNFP23560 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.35■□□□□ 0.21
BDNFP23560 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.35■□□□□ 0.21
BDNFP23560 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.35■□□□□ 0.21
BDNFP23560 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
BDNFP23560 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.35■□□□□ 0.21
BDNFP23560 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.35■□□□□ 0.21
BDNFP23560 AC009486.1-201ENST00000569860 813 ntBASIC16.35■□□□□ 0.21
BDNFP23560 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.35■□□□□ 0.21
BDNFP23560 AL512343.1-201ENST00000605837 169 ntBASIC16.35■□□□□ 0.21
BDNFP23560 AL008721.1-201ENST00000609964 604 ntBASIC16.35■□□□□ 0.21
BDNFP23560 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.35■□□□□ 0.21
BDNFP23560 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 AC007950.2-201ENST00000615045 2347 ntBASIC16.35■□□□□ 0.21
BDNFP23560 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BDNFP23560 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.35■□□□□ 0.21
BDNFP23560 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.34■□□□□ 0.21
BDNFP23560 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
BDNFP23560 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
BDNFP23560 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
BDNFP23560 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
BDNFP23560 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.34■□□□□ 0.21
BDNFP23560 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 BAATP1-201ENST00000412284 1225 ntBASIC16.34■□□□□ 0.21
BDNFP23560 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.34■□□□□ 0.21
BDNFP23560 BCRP2-202ENST00000447763 634 ntBASIC16.34■□□□□ 0.21
BDNFP23560 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.34■□□□□ 0.21
BDNFP23560 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.34■□□□□ 0.21
BDNFP23560 BCRP6-201ENST00000510112 632 ntBASIC16.34■□□□□ 0.21
BDNFP23560 BCRP7-201ENST00000511549 544 ntBASIC16.34■□□□□ 0.21
BDNFP23560 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.34■□□□□ 0.21
BDNFP23560 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.34■□□□□ 0.21
BDNFP23560 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.34■□□□□ 0.21
BDNFP23560 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.34■□□□□ 0.21
BDNFP23560 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
BDNFP23560 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.34■□□□□ 0.21
BDNFP23560 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
BDNFP23560 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BDNFP23560 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.34■□□□□ 0.21
BDNFP23560 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms