Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 KRT18P64-201ENST00000434946 1219 ntBASIC16.34■□□□□ 0.21
APOEP02649 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.34■□□□□ 0.21
APOEP02649 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.34■□□□□ 0.21
APOEP02649 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.34■□□□□ 0.21
APOEP02649 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.34■□□□□ 0.21
APOEP02649 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 AL136379.1-201ENST00000623471 2642 ntBASIC16.34■□□□□ 0.21
APOEP02649 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 AL391825.1-201ENST00000457671 1364 ntBASIC16.34■□□□□ 0.21
APOEP02649 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
APOEP02649 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.34■□□□□ 0.21
APOEP02649 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
APOEP02649 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.34■□□□□ 0.21
APOEP02649 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.34■□□□□ 0.21
APOEP02649 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
APOEP02649 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
APOEP02649 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
APOEP02649 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
APOEP02649 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
APOEP02649 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
APOEP02649 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.33■□□□□ 0.21
APOEP02649 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
APOEP02649 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
APOEP02649 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
APOEP02649 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
APOEP02649 AL353779.1-201ENST00000434793 351 ntBASIC16.33■□□□□ 0.2
APOEP02649 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.33■□□□□ 0.2
APOEP02649 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.33■□□□□ 0.2
APOEP02649 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.33■□□□□ 0.2
APOEP02649 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.33■□□□□ 0.2
APOEP02649 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.33■□□□□ 0.2
APOEP02649 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.33■□□□□ 0.2
APOEP02649 AC190387.1-201ENST00000551683 408 ntBASIC16.33■□□□□ 0.2
APOEP02649 AC023310.3-201ENST00000557027 670 ntBASIC16.33■□□□□ 0.2
APOEP02649 AC100756.1-201ENST00000562736 682 ntBASIC16.33■□□□□ 0.2
APOEP02649 AC138749.3-201ENST00000567691 622 ntBASIC16.33■□□□□ 0.2
APOEP02649 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.33■□□□□ 0.2
APOEP02649 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.33■□□□□ 0.2
APOEP02649 AC116165.1-201ENST00000611806 668 ntBASIC16.33■□□□□ 0.2
APOEP02649 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.33■□□□□ 0.2
APOEP02649 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
APOEP02649 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.33■□□□□ 0.2
APOEP02649 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.33■□□□□ 0.2
APOEP02649 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.33■□□□□ 0.2
APOEP02649 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
APOEP02649 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
APOEP02649 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
APOEP02649 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
APOEP02649 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.32■□□□□ 0.2
APOEP02649 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.32■□□□□ 0.2
APOEP02649 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
APOEP02649 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.32■□□□□ 0.2
APOEP02649 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
APOEP02649 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
APOEP02649 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 TOMM22P5-201ENST00000416399 439 ntBASIC16.32■□□□□ 0.2
APOEP02649 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.32■□□□□ 0.2
APOEP02649 CICP13-201ENST00000422015 2789 ntBASIC16.32■□□□□ 0.2
APOEP02649 SLC7A15P-201ENST00000424028 1363 ntBASIC16.32■□□□□ 0.2
APOEP02649 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 CRB3P1-201ENST00000449338 276 ntBASIC16.32■□□□□ 0.2
APOEP02649 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.32■□□□□ 0.2
APOEP02649 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.32■□□□□ 0.2
APOEP02649 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.32■□□□□ 0.2
APOEP02649 AC138969.3-201ENST00000546612 1459 ntBASIC16.32■□□□□ 0.2
APOEP02649 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.32■□□□□ 0.2
APOEP02649 AC138932.2-201ENST00000548268 1459 ntBASIC16.32■□□□□ 0.2
APOEP02649 AC126755.4-201ENST00000549796 1459 ntBASIC16.32■□□□□ 0.2
APOEP02649 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
APOEP02649 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.32■□□□□ 0.2
APOEP02649 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
APOEP02649 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.32■□□□□ 0.2
APOEP02649 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.32■□□□□ 0.2
APOEP02649 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.32■□□□□ 0.2
APOEP02649 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms