Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 KRT8P37-201ENST00000451609 1420 ntBASIC15.32■□□□□ 0.04
VPS4BO75351 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 AC013726.1-201ENST00000563747 2285 ntBASIC15.32■□□□□ 0.04
VPS4BO75351 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4BO75351 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
VPS4BO75351 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS4BO75351 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS4BO75351 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 AP002414.2-201ENST00000591780 3365 ntBASIC15.31■□□□□ 0.04
VPS4BO75351 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 FAM220BP-201ENST00000377689 816 ntBASIC15.31■□□□□ 0.04
VPS4BO75351 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS4BO75351 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 SPDYE14P-201ENST00000442619 822 ntBASIC15.31■□□□□ 0.04
VPS4BO75351 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 AL139010.1-201ENST00000454878 894 ntBASIC15.31■□□□□ 0.04
VPS4BO75351 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS4BO75351 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 SERBP1P5-201ENST00000510079 1181 ntBASIC15.31■□□□□ 0.04
VPS4BO75351 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.31■□□□□ 0.04
VPS4BO75351 RNA5SP410-201ENST00000516285 106 ntBASIC15.31■□□□□ 0.04
VPS4BO75351 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS4BO75351 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS4BO75351 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.31■□□□□ 0.04
VPS4BO75351 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 FOXO1B-201ENST00000504678 1527 ntBASIC15.31■□□□□ 0.04
VPS4BO75351 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
VPS4BO75351 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
VPS4BO75351 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS4BO75351 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS4BO75351 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS4BO75351 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4BO75351 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
VPS4BO75351 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS4BO75351 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
VPS4BO75351 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS4BO75351 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS4BO75351 EEF1DP4-201ENST00000446006 880 ntBASIC15.3■□□□□ 0.04
VPS4BO75351 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS4BO75351 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS4BO75351 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS4BO75351 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS4BO75351 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS4BO75351 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS4BO75351 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS4BO75351 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS4BO75351 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
VPS4BO75351 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS4BO75351 SPDYE22P-201ENST00000582158 798 ntBASIC15.3■□□□□ 0.04
VPS4BO75351 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS4BO75351 AC027307.2-201ENST00000591252 911 ntBASIC15.3■□□□□ 0.04
VPS4BO75351 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms