Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 AC105233.2-201ENST00000523697 349 ntBASIC15.16■□□□□ 0.02
VPS4AQ9UN37 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 AF228730.5-201ENST00000530288 346 ntBASIC15.16■□□□□ 0.02
VPS4AQ9UN37 AC243562.2-201ENST00000561247 970 ntBASIC15.16■□□□□ 0.02
VPS4AQ9UN37 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 AC023157.3-201ENST00000619086 2088 ntBASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4AQ9UN37 AC006058.4-201ENST00000624016 1670 ntBASIC15.16■□□□□ 0.02
VPS4AQ9UN37 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AC138969.3-201ENST00000546612 1459 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AC138932.2-201ENST00000548268 1459 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AC126755.4-201ENST00000549796 1459 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AL161772.1-201ENST00000610494 4412 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AC098614.1-201ENST00000368528 745 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AC073389.1-201ENST00000595595 795 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 AC003101.2-201ENST00000612557 442 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 SPTSSB-204ENST00000617024 1292 ntBASIC15.15■□□□□ 0.02
VPS4AQ9UN37 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4AQ9UN37 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms