Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
VMP1Q96GC9 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15□□□□□ -0.01
VMP1Q96GC9 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 INGX-202ENST00000489074 768 ntBASIC15□□□□□ -0.01
VMP1Q96GC9 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15□□□□□ -0.01
VMP1Q96GC9 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 AL096865.1-201ENST00000606796 927 ntBASIC15□□□□□ -0.01
VMP1Q96GC9 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15□□□□□ -0.01
VMP1Q96GC9 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 AP002414.2-201ENST00000591780 3365 ntBASIC15□□□□□ -0.01
VMP1Q96GC9 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
VMP1Q96GC9 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15□□□□□ -0.01
VMP1Q96GC9 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 PRAL-201ENST00000624952 3286 ntBASIC14.99□□□□□ -0.01
VMP1Q96GC9 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.99□□□□□ -0.01
VMP1Q96GC9 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.99□□□□□ -0.01
VMP1Q96GC9 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 TEX28P1-201ENST00000613479 1221 ntBASIC14.99□□□□□ -0.01
VMP1Q96GC9 TEX28P2-201ENST00000617764 1221 ntBASIC14.99□□□□□ -0.01
VMP1Q96GC9 AJ011932.1-201ENST00000621707 465 ntBASIC14.99□□□□□ -0.01
VMP1Q96GC9 AL590560.3-201ENST00000623350 461 ntBASIC14.99□□□□□ -0.01
VMP1Q96GC9 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VMP1Q96GC9 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.99□□□□□ -0.01
VMP1Q96GC9 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.98□□□□□ -0.01
VMP1Q96GC9 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
VMP1Q96GC9 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.98□□□□□ -0.01
VMP1Q96GC9 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.98□□□□□ -0.01
VMP1Q96GC9 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
VMP1Q96GC9 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.98□□□□□ -0.01
VMP1Q96GC9 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 LINC01101-201ENST00000622953 1884 ntBASIC14.98□□□□□ -0.01
VMP1Q96GC9 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.98□□□□□ -0.01
VMP1Q96GC9 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.98□□□□□ -0.01
VMP1Q96GC9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VMP1Q96GC9 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms