Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
ATG4AQ8WYN0 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 AL161772.1-201ENST00000610494 4412 ntBASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 AC074338.1-201ENST00000416825 156 ntBASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.17■□□□□ 0.18
ATG4AQ8WYN0 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 FO393414.2-201ENST00000405153 598 ntBASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 MIR4453-201ENST00000584019 89 ntBASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 AC007967.4-201ENST00000614700 386 ntBASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.16■□□□□ 0.18
ATG4AQ8WYN0 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 AC007191.1-201ENST00000623179 2995 ntBASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 ACE3P-201ENST00000423435 1973 ntBASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 CICP14-201ENST00000629111 2732 ntBASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 PKD1P5-201ENST00000532415 10291 ntBASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms