Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 POU5F1P6-201ENST00000466990 990 ntBASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 POU5F1P2-201ENST00000521750 823 ntBASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 SAMD11P1-201ENST00000571429 661 ntBASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 MIR6858-201ENST00000620733 67 ntBASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMC1BQ8NDV3 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 AP003171.2-201ENST00000528208 925 ntBASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 AC007881.3-201ENST00000608897 607 ntBASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 AL161773.1-201ENST00000624845 863 ntBASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMC1BQ8NDV3 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.27■□□□□ 0.51
SMC1BQ8NDV3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.27■□□□□ 0.51
SMC1BQ8NDV3 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMC1BQ8NDV3 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SMC1BQ8NDV3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMC1BQ8NDV3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 POM121L8P-201ENST00000417732 1281 ntBASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 POM121L9P-203ENST00000441984 1285 ntBASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 AL160314.3-201ENST00000556041 767 ntBASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 EIF5AP2-201ENST00000585668 1047 ntBASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 TNRC18P3-201ENST00000441896 2691 ntBASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMC1BQ8NDV3 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 AC124067.4-201ENST00000519691 2379 ntBASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms