Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 AL031055.1-201ENST00000606362 631 ntBASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 CICP20-201ENST00000443330 2801 ntBASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
DEPDC4Q8N2C3 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 AC040160.2-201ENST00000623816 1675 ntBASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CNN2P11-201ENST00000429351 262 ntBASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 MTND2P7-201ENST00000521337 640 ntBASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 AL161645.1-201ENST00000622716 1255 ntBASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ENKUR-202ENST00000376363 1318 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 AC007191.1-201ENST00000623179 2995 ntBASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.61□□□□□ -0.07
DEPDC4Q8N2C3 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms