Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 FKBP4P6-201ENST00000457486 1332 ntBASIC20.75■□□□□ 0.91
NPHP3Q7Z494 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 FAM58BP-201ENST00000439056 645 ntBASIC20.75■□□□□ 0.91
NPHP3Q7Z494 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 AP001065.2-201ENST00000617205 644 ntBASIC20.75■□□□□ 0.91
NPHP3Q7Z494 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.75■□□□□ 0.91
NPHP3Q7Z494 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 PFN2-202ENST00000423691 911 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 MIR6756-201ENST00000616240 63 ntBASIC20.74■□□□□ 0.91
NPHP3Q7Z494 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 AC084364.1-201ENST00000551967 1556 ntBASIC20.74■□□□□ 0.91
NPHP3Q7Z494 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
NPHP3Q7Z494 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 SHC1P1-201ENST00000425230 1745 ntBASIC20.73■□□□□ 0.91
NPHP3Q7Z494 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 AC010141.1-201ENST00000411585 623 ntBASIC20.73■□□□□ 0.91
NPHP3Q7Z494 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 HLA-J-204ENST00000495278 958 ntBASIC20.73■□□□□ 0.91
NPHP3Q7Z494 CDC23-208ENST00000505120 455 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 AC002472.3-201ENST00000640124 621 ntBASIC20.73■□□□□ 0.91
NPHP3Q7Z494 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP3Q7Z494 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms