Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 TOMM22P5-201ENST00000416399 439 ntBASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 AC138969.3-201ENST00000546612 1459 ntBASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 AC138932.2-201ENST00000548268 1459 ntBASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 AC126755.4-201ENST00000549796 1459 ntBASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 AC011467.4-201ENST00000594891 528 ntBASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 AC004840.1-201ENST00000636359 365 ntBASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 MYO15B-237ENST00000642007 4893 ntBASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SYNE3Q6ZMZ3 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 MRPS18AP1-201ENST00000414458 589 ntBASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 MEIS3P1-201ENST00000495167 958 ntBASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 AC092337.1-201ENST00000568699 1129 ntBASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SYNE3Q6ZMZ3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 AC009090.5-201ENST00000624886 2285 ntBASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 AL133267.1-201ENST00000398220 340 ntBASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 SRD5A3P1-201ENST00000603021 949 ntBASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 AJ011932.1-201ENST00000621707 465 ntBASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms