Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.02□□□□□ -0.01
PPP4R4Q6NUP7 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 AC041040.2-201ENST00000622926 2899 ntBASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PPP4R4Q6NUP7 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 AL137784.3-201ENST00000623858 2288 ntBASIC15□□□□□ -0.01
PPP4R4Q6NUP7 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 EHF-205ENST00000527935 557 ntTSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 ELL2P1-201ENST00000413990 1906 ntBASIC15□□□□□ -0.01
PPP4R4Q6NUP7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15□□□□□ -0.01
PPP4R4Q6NUP7 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.99□□□□□ -0.01
PPP4R4Q6NUP7 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms