Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 AC126365.1-201ENST00000578585 1514 ntBASIC17.44■□□□□ 0.38
CIITAP33076 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
CIITAP33076 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CIITAP33076 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CIITAP33076 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.44■□□□□ 0.38
CIITAP33076 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CIITAP33076 AP001582.1-201ENST00000525856 295 ntBASIC17.44■□□□□ 0.38
CIITAP33076 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.44■□□□□ 0.38
CIITAP33076 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.44■□□□□ 0.38
CIITAP33076 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.44■□□□□ 0.38
CIITAP33076 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.44■□□□□ 0.38
CIITAP33076 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CIITAP33076 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CIITAP33076 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CIITAP33076 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CIITAP33076 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.44■□□□□ 0.38
CIITAP33076 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
CIITAP33076 CICP11-201ENST00000434745 2827 ntBASIC17.43■□□□□ 0.38
CIITAP33076 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CIITAP33076 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.43■□□□□ 0.38
CIITAP33076 AC046158.3-201ENST00000624947 2558 ntBASIC17.43■□□□□ 0.38
CIITAP33076 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CIITAP33076 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.43■□□□□ 0.38
CIITAP33076 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CIITAP33076 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CIITAP33076 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CIITAP33076 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.43■□□□□ 0.38
CIITAP33076 BAATP1-201ENST00000412284 1225 ntBASIC17.43■□□□□ 0.38
CIITAP33076 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.43■□□□□ 0.38
CIITAP33076 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.43■□□□□ 0.38
CIITAP33076 AC012441.1-201ENST00000446669 685 ntBASIC17.43■□□□□ 0.38
CIITAP33076 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.43■□□□□ 0.38
CIITAP33076 AC068587.3-201ENST00000526613 355 ntBASIC17.43■□□□□ 0.38
CIITAP33076 SLC25A47P1-201ENST00000531577 414 ntBASIC17.43■□□□□ 0.38
CIITAP33076 TDH-203ENST00000531764 1110 ntBASIC17.43■□□□□ 0.38
CIITAP33076 PTP4A1P2-201ENST00000546033 454 ntBASIC17.43■□□□□ 0.38
CIITAP33076 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.43■□□□□ 0.38
CIITAP33076 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.43■□□□□ 0.38
CIITAP33076 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.43■□□□□ 0.38
CIITAP33076 BTNL10-201ENST00000595971 695 ntBASIC17.43■□□□□ 0.38
CIITAP33076 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.43■□□□□ 0.38
CIITAP33076 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.43■□□□□ 0.38
CIITAP33076 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CIITAP33076 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 AC022532.1-201ENST00000624563 1728 ntBASIC17.43■□□□□ 0.38
CIITAP33076 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CIITAP33076 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.43■□□□□ 0.38
CIITAP33076 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CIITAP33076 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CIITAP33076 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.42■□□□□ 0.38
CIITAP33076 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CIITAP33076 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.42■□□□□ 0.38
CIITAP33076 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.42■□□□□ 0.38
CIITAP33076 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 MSTO2P-201ENST00000314835 1709 ntBASIC17.42■□□□□ 0.38
CIITAP33076 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CIITAP33076 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
CIITAP33076 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
CIITAP33076 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.42■□□□□ 0.38
CIITAP33076 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.42■□□□□ 0.38
CIITAP33076 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 AP001889.1-201ENST00000525414 633 ntBASIC17.42■□□□□ 0.38
CIITAP33076 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CIITAP33076 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CIITAP33076 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.42■□□□□ 0.38
CIITAP33076 AL162274.1-201ENST00000617191 1098 ntBASIC17.42■□□□□ 0.38
CIITAP33076 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms