Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A1P02462 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A1P02462 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL4A1P02462 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 TUBBP5-203ENST00000508529 1334 ntBASIC18.6■□□□□ 0.57
COL4A1P02462 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 PRAL-201ENST00000624952 3286 ntBASIC18.6■□□□□ 0.57
COL4A1P02462 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL4A1P02462 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A1P02462 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A1P02462 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.6■□□□□ 0.57
COL4A1P02462 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A1P02462 RN7SL774P-201ENST00000577467 290 ntBASIC18.6■□□□□ 0.57
COL4A1P02462 DOC2GP-204ENST00000639052 2548 ntBASIC18.6■□□□□ 0.57
COL4A1P02462 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A1P02462 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL4A1P02462 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.6■□□□□ 0.57
COL4A1P02462 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A1P02462 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
COL4A1P02462 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
COL4A1P02462 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 GGCT-203ENST00000409144 836 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A1P02462 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A1P02462 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A1P02462 AC010141.1-201ENST00000411585 623 ntBASIC18.6■□□□□ 0.57
COL4A1P02462 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A1P02462 PTPA-217ENST00000434095 870 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A1P02462 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A1P02462 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A1P02462 PARP8-218ENST00000513738 596 ntTSL 4 BASIC18.6■□□□□ 0.57
COL4A1P02462 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A1P02462 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL4A1P02462 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A1P02462 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A1P02462 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A1P02462 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A1P02462 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
COL4A1P02462 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.59■□□□□ 0.57
COL4A1P02462 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A1P02462 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A1P02462 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.59■□□□□ 0.57
COL4A1P02462 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A1P02462 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A1P02462 AC004899.1-201ENST00000424687 1714 ntBASIC18.59■□□□□ 0.57
COL4A1P02462 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
COL4A1P02462 AL662890.1-201ENST00000396818 632 ntBASIC18.59■□□□□ 0.57
COL4A1P02462 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A1P02462 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
COL4A1P02462 AC116345.2-201ENST00000512837 523 ntBASIC18.59■□□□□ 0.57
COL4A1P02462 AC132192.2-201ENST00000596206 1147 ntBASIC18.59■□□□□ 0.57
COL4A1P02462 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC18.59■□□□□ 0.57
COL4A1P02462 AC002472.3-201ENST00000640124 621 ntBASIC18.59■□□□□ 0.57
COL4A1P02462 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A1P02462 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A1P02462 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.59■□□□□ 0.57
COL4A1P02462 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A1P02462 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A1P02462 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A1P02462 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
COL4A1P02462 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A1P02462 AL138725.1-201ENST00000407347 1314 ntBASIC18.58■□□□□ 0.57
COL4A1P02462 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A1P02462 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A1P02462 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A1P02462 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.58■□□□□ 0.57
COL4A1P02462 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.58■□□□□ 0.57
COL4A1P02462 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC18.58■□□□□ 0.57
COL4A1P02462 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A1P02462 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A1P02462 FOS-206ENST00000555347 1280 ntTSL 2 BASIC18.58■□□□□ 0.57
COL4A1P02462 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC18.58■□□□□ 0.57
COL4A1P02462 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.58■□□□□ 0.57
COL4A1P02462 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC18.58■□□□□ 0.57
COL4A1P02462 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A1P02462 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.58■□□□□ 0.56
COL4A1P02462 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
COL4A1P02462 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC18.58■□□□□ 0.56
COL4A1P02462 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
COL4A1P02462 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A1P02462 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A1P02462 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.58■□□□□ 0.56
COL4A1P02462 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A1P02462 MIR33B-201ENST00000385104 96 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms