Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SSSCA1O60232 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SSSCA1O60232 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.36
SSSCA1O60232 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
SSSCA1O60232 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
SSSCA1O60232 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
SSSCA1O60232 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
SSSCA1O60232 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SSSCA1O60232 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SSSCA1O60232 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
SSSCA1O60232 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.77□□□□□ -0.36
SSSCA1O60232 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.77□□□□□ -0.37
SSSCA1O60232 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 SAPCD2P3-201ENST00000455031 850 ntBASIC12.77□□□□□ -0.37
SSSCA1O60232 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC12.77□□□□□ -0.37
SSSCA1O60232 RPS29-206ENST00000557111 488 ntTSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.77□□□□□ -0.37
SSSCA1O60232 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
SSSCA1O60232 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.77□□□□□ -0.37
SSSCA1O60232 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 OS9-204ENST00000389146 2091 ntTSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.77□□□□□ -0.37
SSSCA1O60232 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
SSSCA1O60232 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SSSCA1O60232 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
SSSCA1O60232 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC12.76□□□□□ -0.37
SSSCA1O60232 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SSSCA1O60232 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 BX640514.1-201ENST00000583223 1918 ntBASIC12.76□□□□□ -0.37
SSSCA1O60232 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SSSCA1O60232 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 INIP-202ENST00000374236 874 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC12.76□□□□□ -0.37
SSSCA1O60232 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC12.76□□□□□ -0.37
SSSCA1O60232 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 AC073648.2-201ENST00000510116 352 ntBASIC12.76□□□□□ -0.37
SSSCA1O60232 MOK-208ENST00000519058 917 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
SSSCA1O60232 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.76□□□□□ -0.37
SSSCA1O60232 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.76□□□□□ -0.37
SSSCA1O60232 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 AC008735.5-201ENST00000623544 497 ntBASIC12.76□□□□□ -0.37
SSSCA1O60232 AL358472.4-201ENST00000633140 710 ntBASIC12.76□□□□□ -0.37
SSSCA1O60232 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
SSSCA1O60232 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 AL691432.1-201ENST00000596308 1422 ntBASIC12.76□□□□□ -0.37
SSSCA1O60232 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC12.76□□□□□ -0.37
SSSCA1O60232 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SSSCA1O60232 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.76□□□□□ -0.37
SSSCA1O60232 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms