Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 PAUPAR-201ENST00000630360 2965 ntBASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 KRT18P64-201ENST00000434946 1219 ntBASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 AC106886.1-201ENST00000568660 600 ntBASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 AC133539.2-201ENST00000604757 467 ntBASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.21□□□□□ -0.13
NPIPA3F8WFD2 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.21□□□□□ -0.14
NPIPA3F8WFD2 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
NPIPA3F8WFD2 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
NPIPA3F8WFD2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NPIPA3F8WFD2 AC011270.2-201ENST00000624293 2550 ntBASIC14.21□□□□□ -0.14
NPIPA3F8WFD2 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
NPIPA3F8WFD2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.21□□□□□ -0.14
NPIPA3F8WFD2 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 MIR658-201ENST00000385210 100 ntBASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AC079776.1-201ENST00000401540 1152 ntBASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 FAM86LP-201ENST00000478302 853 ntBASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AC010319.3-201ENST00000597028 470 ntBASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AC097376.2-205ENST00000610159 5334 ntBASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AC007950.2-201ENST00000615045 2347 ntBASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AC018892.3-201ENST00000623986 2499 ntBASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 OR2I1P-209ENST00000641730 5365 ntBASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NPIPA3F8WFD2 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 MYO15B-237ENST00000642007 4893 ntBASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
NPIPA3F8WFD2 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms