Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 AL359258.3-201ENST00000622910 2331 ntBASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 OR2K2-202ENST00000374428 1038 ntBASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 AL645933.1-201ENST00000440087 609 ntBASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 AC051619.9-201ENST00000623237 597 ntBASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK3Q9BYB0 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 AC078875.1-201ENST00000431907 724 ntBASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 AL157407.1-201ENST00000435784 904 ntBASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 RN7SL818P-201ENST00000485099 259 ntBASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 ALG3P1-201ENST00000508806 1114 ntBASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 AC090857.1-201ENST00000527400 390 ntBASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 RN7SL725P-201ENST00000606439 259 ntBASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 AC073352.2-201ENST00000609385 439 ntBASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 AC003102.2-201ENST00000589195 1469 ntBASIC19.6■□□□□ 0.73
SHANK3Q9BYB0 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC006335.1-201ENST00000445200 547 ntBASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC098935.1-201ENST00000446057 611 ntBASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC007881.3-201ENST00000608897 607 ntBASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC105250.1-201ENST00000509378 2057 ntBASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 CYP4F23P-201ENST00000593402 1579 ntBASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 TBC1D3J-201ENST00000620719 1426 ntBASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AMT-239ENST00000636865 1914 ntTSL 5 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 PPOX-204ENST00000462866 473 ntTSL 5 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 MIR3147-201ENST00000577811 66 ntBASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 AC005357.2-202ENST00000590507 1060 ntBASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK3Q9BYB0 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK3Q9BYB0 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK3Q9BYB0 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK3Q9BYB0 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK3Q9BYB0 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK3Q9BYB0 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.58■□□□□ 0.73
SHANK3Q9BYB0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK3Q9BYB0 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 AC100827.2-201ENST00000563214 1194 ntBASIC19.58■□□□□ 0.72
SHANK3Q9BYB0 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms