Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 PFN1P12-201ENST00000455938 534 ntBASIC15.11■□□□□ 0.01
LMX1AQ8TE12 RPL13AP20-201ENST00000459725 609 ntBASIC15.11■□□□□ 0.01
LMX1AQ8TE12 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 AC078819.1-201ENST00000547454 765 ntBASIC15.11■□□□□ 0.01
LMX1AQ8TE12 AC012085.1-201ENST00000548270 765 ntBASIC15.11■□□□□ 0.01
LMX1AQ8TE12 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 RN7SL560P-201ENST00000577943 264 ntBASIC15.11■□□□□ 0.01
LMX1AQ8TE12 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1AQ8TE12 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 AC112504.1-201ENST00000623415 1841 ntBASIC15.1■□□□□ 0.01
LMX1AQ8TE12 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.1■□□□□ 0.01
LMX1AQ8TE12 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 RNU1-114P-201ENST00000365297 166 ntBASIC15.1■□□□□ 0.01
LMX1AQ8TE12 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 AC108725.1-201ENST00000495472 409 ntBASIC15.1■□□□□ 0.01
LMX1AQ8TE12 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1AQ8TE12 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms