Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 MIR663B-201ENST00000408361 115 ntBASIC19.19■□□□□ 0.66
SYNE4Q8N205 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 AP003171.2-201ENST00000528208 925 ntBASIC19.19■□□□□ 0.66
SYNE4Q8N205 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 AC104982.3-201ENST00000581995 514 ntBASIC19.19■□□□□ 0.66
SYNE4Q8N205 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 AC004466.1-201ENST00000599515 1080 ntBASIC19.19■□□□□ 0.66
SYNE4Q8N205 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 AC138028.6-201ENST00000616106 1482 ntBASIC19.19■□□□□ 0.66
SYNE4Q8N205 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE4Q8N205 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
SYNE4Q8N205 HYMAI-201ENST00000635591 3347 ntBASIC19.18■□□□□ 0.66
SYNE4Q8N205 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 PCDHA1-201ENST00000378133 2726 ntBASIC19.18■□□□□ 0.66
SYNE4Q8N205 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 AL391005.1-201ENST00000623953 2435 ntBASIC19.18■□□□□ 0.66
SYNE4Q8N205 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 CD8B2-202ENST00000417670 633 ntBASIC19.18■□□□□ 0.66
SYNE4Q8N205 CNN2P10-201ENST00000443067 918 ntBASIC19.18■□□□□ 0.66
SYNE4Q8N205 AC004898.1-201ENST00000451057 766 ntBASIC19.18■□□□□ 0.66
SYNE4Q8N205 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 SCARNA20.5-201ENST00000516991 142 ntBASIC19.18■□□□□ 0.66
SYNE4Q8N205 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
SYNE4Q8N205 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE4Q8N205 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 AC020916.1-201ENST00000587762 1774 ntBASIC19.17■□□□□ 0.66
SYNE4Q8N205 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 TPM3P8-201ENST00000330554 643 ntBASIC19.17■□□□□ 0.66
SYNE4Q8N205 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms