Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA4P78363 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA4P78363 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA4P78363 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
ABCA4P78363 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA4P78363 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA4P78363 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA4P78363 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA4P78363 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.4□□□□□ -0.26
ABCA4P78363 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA4P78363 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.4□□□□□ -0.26
ABCA4P78363 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.27
ABCA4P78363 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
ABCA4P78363 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
ABCA4P78363 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
ABCA4P78363 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
ABCA4P78363 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 RPS2P36-201ENST00000456516 831 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
ABCA4P78363 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 SPCS2P2-201ENST00000603270 608 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 AC145423.3-201ENST00000615987 467 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.39□□□□□ -0.27
ABCA4P78363 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 KRT8P19-201ENST00000551916 1455 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 AC004898.1-201ENST00000451057 766 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.39□□□□□ -0.27
ABCA4P78363 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.39□□□□□ -0.27
ABCA4P78363 AC025279.2-201ENST00000569730 653 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 AC015910.1-201ENST00000579400 975 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 MIR4706-201ENST00000582134 82 ntBASIC13.39□□□□□ -0.27
ABCA4P78363 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.39□□□□□ -0.27
ABCA4P78363 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.39□□□□□ -0.27
ABCA4P78363 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
ABCA4P78363 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
ABCA4P78363 AL607033.1-201ENST00000623900 1599 ntBASIC13.38□□□□□ -0.27
ABCA4P78363 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.38□□□□□ -0.27
ABCA4P78363 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
ABCA4P78363 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 NKAIN1P1-201ENST00000435754 582 ntBASIC13.38□□□□□ -0.27
ABCA4P78363 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms